Information for 15-GMGTGTKCCASAC (Motif 20)

A T C G T G A C A C T G A C G T A C T G A C G T A C T G A T G C A G T C C G T A A T G C C G T A A G T C
Reverse Opposite:
A C T G A C G T A T C G A C G T A C T G A T C G G T A C C G T A A G T C C G T A A G T C A C G T A T G C
p-value:1e-7
log p-value:-1.684e+01
Information Content per bp:1.889
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.3 +/- 21.0bp
Average Position of motif in Background19.7 +/- 5.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GMGTGTKCCASAC-
--AGGTGHCAGACA
 A T C G T G A C A C T G A C G T A C T G A C G T A C T G A T G C A G T C C G T A A T G C C G T A A G T C A C G T
A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GMGTGTKCCASAC
NNGCGTGTGTGCNGCN-
 A C G T A C G T A C G T A C G T A T C G T G A C A C T G A C G T A C T G A C G T A C T G A T G C A G T C C G T A A T G C C G T A A G T C
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GMGTGTKCCASAC-
----ATGCCAGACN
 A T C G T G A C A C T G A C G T A C T G A C G T A C T G A T G C A G T C C G T A A T G C C G T A A G T C A C G T
A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GMGTGTKCCASAC
--CTGTTCCTGG-
 A T C G T G A C A C T G A C G T A C T G A C G T A C T G A T G C A G T C C G T A A T G C C G T A A G T C
A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GMGTGTKCCASAC--
--AGGTGNCAGACAG
 A T C G T G A C A C T G A C G T A C T G A C G T A C T G A T G C A G T C C G T A A T G C C G T A A G T C A C G T A C G T
A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:GMGTGTKCCASAC--
-------CCAGACAG
 A T C G T G A C A C T G A C G T A C T G A C G T A C T G A T G C A G T C C G T A A T G C C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:GMGTGTKCCASAC----
-------CCAGACRSVB
 A T C G T G A C A C T G A C G T A C T G A C G T A C T G A T G C A G T C C G T A A T G C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GMGTGTKCCASAC
TGCGTG--------
 A C G T A T C G T G A C A C T G A C G T A C T G A C G T A C T G A T G C A G T C C G T A A T G C C G T A A G T C
G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GMGTGTKCCASAC
TGGGTGTGGC----
 A C G T A T C G T G A C A C T G A C G T A C T G A C G T A C T G A T G C A G T C C G T A A T G C C G T A A G T C
C G A T A C T G A C T G A C T G A G C T A C T G A C G T C T A G C A T G G A T C A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GMGTGTKCCASAC
NNNNTTGTGTGCTTNN-
 A C G T A C G T A C G T A C G T A T C G T G A C A C T G A C G T A C T G A C G T A C T G A T G C A G T C C G T A A T G C C G T A A G T C
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G A C G T