Information for 9-RATGCRTGTCACC (Motif 10)

C T A G C G T A A C G T A C T G A G T C C T A G A C G T A C T G A C G T A G T C C G T A A G T C A G T C
Reverse Opposite:
A C T G T C A G A C G T A C T G C G T A A G T C C G T A A G T C C T A G A G T C G T C A A C G T A G T C
p-value:1e-11
log p-value:-2.706e+01
Information Content per bp:1.905
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.5 +/- 27.5bp
Average Position of motif in Background39.0 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0164.1_Six4/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:RATGCRTGTCACC-----
-ATAAATGACACCTATCA
 C T A G C G T A A C G T A C T G A G T C C T A G A C G T A C T G A C G T A G T C C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

MEIS3/MA0775.1/Jaspar

Match Rank:2
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:RATGCRTGTCACC
----CCTGTCAA-
 C T A G C G T A A C G T A C T G A G T C C T A G A C G T A C T G A C G T A G T C C G T A A G T C A G T C
A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:3
Score:0.63
Offset:6
Orientation:forward strand
Alignment:RATGCRTGTCACC-
------TGTCANYT
 C T A G C G T A A C G T A C T G A G T C C T A G A C G T A C T G A C G T A G T C C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.63
Offset:3
Orientation:forward strand
Alignment:RATGCRTGTCACC
---VGCTGWCAVB
 C T A G C G T A A C G T A C T G A G T C C T A G A C G T A C T G A C G T A G T C C G T A A G T C A G T C
A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

MEIS1/MA0498.2/Jaspar

Match Rank:5
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:RATGCRTGTCACC
-----NTGTCAN-
 C T A G C G T A A C G T A C T G A G T C C T A G A C G T A C T G A C G T A G T C C G T A A G T C A G T C
A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:6
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:RATGCRTGTCACC---
----SCTGTCARCACC
 C T A G C G T A A C G T A C T G A G T C C T A G A C G T A C T G A C G T A G T C C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:RATGCRTGTCACC
-TTGCGTGCVA--
 C T A G C G T A A C G T A C T G A G T C C T A G A C G T A C T G A C G T A G T C C G T A A G T C A G T C
A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:RATGCRTGTCACC-
-CTGTCTGTCACCT
 C T A G C G T A A C G T A C T G A G T C C T A G A C G T A C T G A C G T A G T C C G T A A G T C A G T C A C G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:RATGCRTGTCACC
--TGCGTG-----
 C T A G C G T A A C G T A C T G A G T C C T A G A C G T A C T G A C G T A G T C C G T A A G T C A G T C
A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:RATGCRTGTCACC-
------TGACACCT
 C T A G C G T A A C G T A C T G A G T C C T A G A C G T A C T G A C G T A G T C C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T