Information for 20-AGCAGRTRGWAMA (Motif 20)

C G T A A C T G A G T C C G T A A C T G C T A G A C G T C T A G A T C G C G T A C G T A G T A C C G T A
Reverse Opposite:
A C G T A C T G A C G T C G A T A T G C A G T C C G T A A G T C A G T C C G A T A C T G A G T C A C G T
p-value:1e-10
log p-value:-2.306e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.2 +/- 17.8bp
Average Position of motif in Background30.8 +/- 38.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AGCAGRTRGWAMA
AACAGATGGC---
 C G T A A C T G A G T C C G T A A C T G C T A G A C G T C T A G A T C G C G T A C G T A G T A C C G T A
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AGCAGRTRGWAMA
AACAGATGGT---
 C G T A A C T G A G T C C G T A A C T G C T A G A C G T C T A G A T C G C G T A C G T A G T A C C G T A
T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGRTRGWAMA
SDGCAGGTGCNS--
 A C G T C G T A A C T G A G T C C G T A A C T G C T A G A C G T C T A G A T C G C G T A C G T A G T A C C G T A
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGCAGRTRGWAMA
AACAGGTGT----
 C G T A A C T G A G T C C G T A A C T G C T A G A C G T C T A G A T C G C G T A C G T A G T A C C G T A
C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----AGCAGRTRGWAMA
NNNNAGCAGCTGCTGAN
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G C T A G A C G T C T A G A T C G C G T A C G T A G T A C C G T A
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

FIGLA/MA0820.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AGCAGRTRGWAMA
AACAGGTGNT---
 C G T A A C T G A G T C C G T A A C T G C T A G A C G T C T A G A T C G C G T A C G T A G T A C C G T A
G C T A T G C A G T A C G C T A A T C G A T C G C A G T C T A G C A T G C G A T A C G T A C G T A C G T

TCF3/MA0522.2/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGCAGRTRGWAMA
NNCAGGTGTN---
 C G T A A C T G A G T C C G T A A C T G C T A G A C G T C T A G A T C G C G T A C G T A G T A C C G T A
G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T A C G T A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGCAGRTRGWAMA
NNCAGGTGNN---
 C G T A A C T G A G T C C G T A A C T G C T A G A C G T C T A G A T C G C G T A C G T A G T A C C G T A
C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T A C G T A C G T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGCAGRTRGWAMA
AACAKATGGY---
 C G T A A C T G A G T C C G T A A C T G C T A G A C G T C T A G A T C G C G T A C G T A G T A C C G T A
C T G A T G C A A G T C T C G A A C T G T G C A G C A T A C T G A C T G G A C T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGCAGRTRGWAMA
CACAGCAGGGGG----
 A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G C T A G A C G T C T A G A T C G C G T A C G T A G T A C C G T A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T