Information for 18-HCAATTTATCACA (Motif 18)

G A C T A T G C C G T A C G T A A C G T C G A T C G A T C G T A G C A T A G T C C G T A A G T C G T C A
Reverse Opposite:
A C G T A C T G A C G T A C T G C G T A A C G T C G T A C G T A C G T A C G A T A C G T A T C G C G T A
p-value:1e-10
log p-value:-2.387e+01
Information Content per bp:1.844
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.6 +/- 28.0bp
Average Position of motif in Background56.1 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:HCAATTTATCACA
-TCATCAATCA--
 G A C T A T G C C G T A C G T A A C G T C G A T C G A T C G T A G C A T A G T C C G T A A G T C G T C A
A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----HCAATTTATCACA
ATAAACAATTAAACA--
 A C G T A C G T A C G T A C G T G A C T A T G C C G T A C G T A A C G T C G A T C G A T C G T A G C A T A G T C C G T A A G T C G T C A
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-HCAATTTATCACA
RGCCATYAATCA--
 A C G T G A C T A T G C C G T A C G T A A C G T C G A T C G A T C G T A G C A T A G T C C G T A A G T C G T C A
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:HCAATTTATCACA---
NNAATTAATGACCNNN
 G A C T A T G C C G T A C G T A A C G T C G A T C G A T C G T A G C A T A G T C C G T A A G T C G T C A A C G T A C G T A C G T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

PH0132.1_Pax6/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----HCAATTTATCACA
GNNAATTAATTAATCA--
 A C G T A C G T A C G T A C G T A C G T G A C T A T G C C G T A C G T A A C G T C G A T C G A T C G T A G C A T A G T C C G T A A G T C G T C A
C A T G G C A T A T G C T G C A T G C A G A C T G C A T T C G A G C T A C G A T A C G T C G T A C T G A A C G T G A T C T C G A A C G T A C G T

PH0038.1_Hlx/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--HCAATTTATCACA
CCATAATTAATTACA
 A C G T A C G T G A C T A T G C C G T A C G T A A C G T C G A T C G A T C G T A G C A T A G T C C G T A A G T C G T C A
G T A C G T A C G T C A G A C T G C T A C G T A G A C T G C A T C T G A C T G A G C A T C G A T C T G A G A T C G T C A

PH0099.1_Lhx9/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----HCAATTTATCACA
CCCATTAATTAATCACC
 A C G T A C G T A C G T A C G T G A C T A T G C C G T A C G T A A C G T C G A T C G A T C G T A G C A T A G T C C G T A A G T C G T C A
A G T C A T G C G A T C C T G A G A C T G A C T T G C A C T G A G A C T A C G T C T G A C T G A C G A T G A T C T G C A A T G C A G T C

PH0124.1_Obox5_1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-HCAATTTATCACA---
NANANTTAATCCCNNNN
 A C G T G A C T A T G C C G T A C G T A A C G T C G A T C G A T C G T A G C A T A G T C C G T A A G T C G T C A A C G T A C G T A C G T
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:9
Score:0.63
Offset:4
Orientation:forward strand
Alignment:HCAATTTATCACA-
----ATTAACACCT
 G A C T A T G C C G T A C G T A A C G T C G A T C G A T C G T A G C A T A G T C C G T A A G T C G T C A A C G T
A C G T A C G T A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T

PH0012.1_Cdx1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:HCAATTTATCACA---
NAATTTTATTACCTNN
 G A C T A T G C C G T A C G T A A C G T C G A T C G A T C G T A G C A T A G T C C G T A A G T C G T C A A C G T A C G T A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A