Information for 1-CCTCTTTACACTCACA (Motif 1)

A G T C G T A C G C A T A G T C C A G T A C G T A C G T T C G A T A G C C G T A G T A C A C G T G T A C G C T A G T A C G T C A
Reverse Opposite:
A C G T A C T G C A G T A C T G C G T A C A T G C G A T A C T G A C G T T G C A G T C A G T C A T C A G C G T A A C T G A C T G
p-value:1e-9
log p-value:-2.272e+01
Information Content per bp:1.680
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif6.48%
Number of Background Sequences with motif62.8
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets43.7 +/- 28.7bp
Average Position of motif in Background50.2 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0113.1_Nkx2-4/Jaspar

Match Rank:1
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCTCTTTACACTCACA
TAAGCCACTTGAAATT----
 A C G T A C G T A C G T A C G T A G T C G T A C G C A T A G T C C A G T A C G T A C G T T C G A T A G C C G T A G T A C A C G T G T A C G C T A G T A C G T C A
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T A C G T A C G T A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:2
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CCTCTTTACACTCACA-----
------AAAAATAACAAACGG
 A G T C G T A C G C A T A G T C C A G T A C G T A C G T T C G A T A G C C G T A G T A C A C G T G T A C G C T A G T A C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

MGA/MA0801.1/Jaspar

Match Rank:3
Score:0.52
Offset:11
Orientation:reverse strand
Alignment:CCTCTTTACACTCACA---
-----------TCACACCT
 A G T C G T A C G C A T A G T C C A G T A C G T A C G T T C G A T A G C C G T A G T A C A C G T G T A C G C T A G T A C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T

Gfi1/MA0038.1/Jaspar

Match Rank:4
Score:0.52
Offset:7
Orientation:forward strand
Alignment:CCTCTTTACACTCACA-
-------CAAATCACTG
 A G T C G T A C G C A T A G T C C A G T A C G T A C G T T C G A T A G C C G T A G T A C A C G T G T A C G C T A G T A C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

PH0171.1_Nkx2-1/Jaspar

Match Rank:5
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----CCTCTTTACACTCACA
TAAGCCACTTGAAATT----
 A C G T A C G T A C G T A C G T A G T C G T A C G C A T A G T C C A G T A C G T A C G T T C G A T A G C C G T A G T A C A C G T G T A C G C T A G T A C G T C A
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T A C G T A C G T A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:6
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CCTCTTTACACTCACA
TAAGCCACTTAACATT----
 A C G T A C G T A C G T A C G T A G T C G T A C G C A T A G T C C A G T A C G T A C G T T C G A T A G C C G T A G T A C A C G T G T A C G C T A G T A C G T C A
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T A C G T A C G T A C G T A C G T

TBX1/MA0805.1/Jaspar

Match Rank:7
Score:0.51
Offset:11
Orientation:reverse strand
Alignment:CCTCTTTACACTCACA---
-----------TCACACCT
 A G T C G T A C G C A T A G T C C A G T A C G T A C G T T C G A T A G C C G T A G T A C A C G T G T A C G C T A G T A C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.51
Offset:3
Orientation:forward strand
Alignment:CCTCTTTACACTCACA
---SCTGTCAVTCAV-
 A G T C G T A C G C A T A G T C C A G T A C G T A C G T T C G A T A G C C G T A G T A C A C G T G T A C G C T A G T A C G T C A
A C G T A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:9
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----CCTCTTTACACTCACA
ATAACCACTTGAAAATT---
 A C G T A C G T A C G T A C G T A G T C G T A C G C A T A G T C C A G T A C G T A C G T T C G A T A G C C G T A G T A C A C G T G T A C G C T A G T A C G T C A
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T A C G T A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:10
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----CCTCTTTACACTCACA
TAAGCCACTTGAATTT----
 A C G T A C G T A C G T A C G T A G T C G T A C G C A T A G T C C A G T A C G T A C G T T C G A T A G C C G T A G T A C A C G T G T A C G C T A G T A C G T C A
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T A C G T A C G T A C G T A C G T