Information for 5-AGACGGGTAG (Motif 9)

C T G A C T A G G T C A G A T C C A T G C T A G C T A G A C G T C G T A A C T G
Reverse Opposite:
A G T C G C A T T G C A A G T C G A T C G T A C C T A G A C G T A G T C A G C T
p-value:1e-6
log p-value:-1.433e+01
Information Content per bp:1.729
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif5.35%
Number of Background Sequences with motif461.2
Percentage of Background Sequences with motif0.92%
Average Position of motif in Targets42.9 +/- 30.0bp
Average Position of motif in Background50.9 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AGACGGGTAG
CCAGACRSVB--
 A C G T A C G T C T G A C T A G G T C A G A T C C A T G C T A G C T A G A C G T C G T A A C T G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGACGGGTAG-----
AGATGKDGAGATAAG
 C T G A C T A G G T C A G A T C C A T G C T A G C T A G A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C G T A A C T G G T C A A C G T A T C G C A G T C T A G T C A G C G T A A C T G C G T A A C G T C G T A C T G A T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGACGGGTAG
CCAGACAG----
 A C G T A C G T C T G A C T A G G T C A G A T C C A T G C T A G C T A G A C G T C G T A A C T G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGACGGGTAG
GGAGGGGGAA
 C T G A C T A G G T C A G A T C C A T G C T A G C T A G A C G T C G T A A C T G
A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A

PB0024.1_Gcm1_1/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----AGACGGGTAG--
NNNNATGCGGGTNNNN
 A C G T A C G T A C G T A C G T C T G A C T A G G T C A G A T C C A T G C T A G C T A G A C G T C G T A A C T G A C G T A C G T
G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A

PB0167.1_Sox13_2/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGACGGGTAG------
GTATTGGGTGGGTAATT
 A C G T C T G A C T A G G T C A G A T C C A T G C T A G C T A G A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T

GCM2/MA0767.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGACGGGTAG
TATGCGGGTA-
 A C G T C T G A C T A G G T C A G A T C C A T G C T A G C T A G A C G T C G T A A C T G
A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A A C G T

PB0154.1_Osr1_2/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGACGGGTAG-----
NNNTTAGGTAGCNTNT
 A C G T C T G A C T A G G T C A G A T C C A T G C T A G C T A G A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C T G C A G T G C T A C A G T A G C T C G T A C T A G A C T G C G A T C T G A C T A G A G T C C T G A C G A T C T A G G A C T

GCM1/MA0646.1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AGACGGGTAG
CATGCGGGTAC
 A C G T C T G A C T A G G T C A G A T C C A T G C T A G C T A G A C G T C G T A A C T G
A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C

PB0117.1_Eomes_2/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGACGGGTAG----
GCGGAGGTGTCGCCTC
 A C G T A C G T C T G A C T A G G T C A G A T C C A T G C T A G C T A G A C G T C G T A A C T G A C G T A C G T A C G T A C G T
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C