Information for 1-GGAGTAKYTT (Motif 6)

A C T G T A C G C G T A A C T G C A G T C T G A C A G T A G C T A G C T G C A T
Reverse Opposite:
C G T A C T G A T C G A G T C A G A C T G T C A T G A C C G A T A T G C A G T C
p-value:1e-8
log p-value:-1.928e+01
Information Content per bp:1.708
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif7.00%
Number of Background Sequences with motif565.9
Percentage of Background Sequences with motif1.14%
Average Position of motif in Targets40.7 +/- 19.7bp
Average Position of motif in Background51.1 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0129.1_Otx1/Jaspar

Match Rank:1
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GGAGTAKYTT--
AGAGGGGATTAATTTAT
 A C G T A C G T A C G T A C G T A C G T A C T G T A C G C G T A A C T G C A G T C T G A C A G T A G C T A G C T G C A T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

PH0124.1_Obox5_1/Jaspar

Match Rank:2
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----GGAGTAKYTT--
TAGAGGGATTAAATTTC
 A C G T A C G T A C G T A C G T A C G T A C T G T A C G C G T A A C T G C A G T C T G A C A G T A G C T A G C T G C A T A C G T A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

PH0035.1_Gsc/Jaspar

Match Rank:3
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----GGAGTAKYTT--
NNAAGGGATTAACGANT
 A C G T A C G T A C G T A C G T A C G T A C T G T A C G C G T A A C T G C A G T C T G A C A G T A G C T A G C T G C A T A C G T A C G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T

PH0125.1_Obox5_2/Jaspar

Match Rank:4
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----GGAGTAKYTT--
NANAGGGATTAATTATN
 A C G T A C G T A C G T A C G T A C G T A C T G T A C G C G T A A C T G C A G T C T G A C A G T A G C T A G C T G C A T A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

PH0139.1_Pitx3/Jaspar

Match Rank:5
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GGAGTAKYTT--
AGGGGGATTAGCTGCC
 A C G T A C G T A C G T A C G T A C T G T A C G C G T A A C T G C A G T C T G A C A G T A G C T A G C T G C A T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GGAGTAKYTT
GGATTAGC--
 A C T G T A C G C G T A A C T G C A G T C T G A C A G T A G C T A G C T G C A T
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:7
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------GGAGTAKYTT-
TGAACCGGATTAATGAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T A C G C G T A A C T G C A G T C T G A C A G T A G C T A G C T G C A T A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:8
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------GGAGTAKYTT-
TGAACCGGATTAATGAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T A C G C G T A A C T G C A G T C T G A C A G T A G C T A G C T G C A T A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

PH0138.1_Pitx2/Jaspar

Match Rank:9
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GGAGTAKYTT--
TGAAGGGATTAATCATC
 A C G T A C G T A C G T A C G T A C G T A C T G T A C G C G T A A C T G C A G T C T G A C A G T A G C T A G C T G C A T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PITX3/MA0714.1/Jaspar

Match Rank:10
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GGAGTAKYTT
GGGATTANN--
 A C G T A C T G T A C G C G T A A C T G C A G T C T G A C A G T A G C T A G C T G C A T
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T