Information for 5-RAKASAKAWATATWTM (Motif 12)

T C A G C G T A A C T G C G T A A T C G C G T A A C T G C G T A C G A T C G T A A C G T C G T A A C G T C G T A A C G T G T C A
Reverse Opposite:
C A G T C G T A C G A T C G T A A C G T G T C A A C G T G C T A A C G T G T A C A C G T A T G C A C G T G T A C A C G T A G T C
p-value:1e-2
log p-value:-5.326e+00
Information Content per bp:1.824
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets14.0 +/- 0.0bp
Average Position of motif in Background61.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0163.1_Six6_2/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:RAKASAKAWATATWTM----
---ANNNGGATATATCCNNN
 T C A G C G T A A C T G C G T A A T C G C G T A A C T G C G T A C G A T C G T A A C G T C G T A A C G T C G T A A C G T G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T

PB0080.1_Tbp_1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:RAKASAKAWATATWTM--
--NANTTATATATAANGN
 T C A G C G T A A C T G C G T A A T C G C G T A A C T G C G T A C G A T C G T A A C G T C G T A A C G T C G T A A C G T G T C A A C G T A C G T
A C G T A C G T A G C T G T C A C A G T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A C G T A C T A G C T G A

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:RAKASAKAWATATWTM
YATGCATATRCATRT-
 T C A G C G T A A C T G C G T A A T C G C G T A A C T G C G T A C G A T C G T A A C G T C G T A A C G T C G T A A C G T G T C A
G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T A C G T

PB0198.1_Zfp128_2/Jaspar

Match Rank:4
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:RAKASAKAWATATWTM--
----NNTATANATATACN
 T C A G C G T A A C T G C G T A A T C G C G T A A C T G C G T A C G A T C G T A A C G T C G T A A C G T C G T A A C G T G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A T C G A C T G G C A T C T G A G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G T A C G T C A

PB0126.1_Gata5_2/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:RAKASAKAWATATWTM-
GACAGAGATATCAGTGT
 T C A G C G T A A C T G C G T A A T C G C G T A A C T G C G T A C G A T C G T A A C G T C G T A A C G T C G T A A C G T G T C A A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:RAKASAKAWATATWTM
--TATGTAAATAT---
 T C A G C G T A A C T G C G T A A T C G C G T A A C T G C G T A C G A T C G T A A C G T C G T A A C G T C G T A A C G T G T C A
A C G T A C G T G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T A C G T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:7
Score:0.52
Offset:6
Orientation:forward strand
Alignment:RAKASAKAWATATWTM----
------CTAATATTGCTAAA
 T C A G C G T A A C T G C G T A A T C G C G T A A C T G C G T A C G A T C G T A A C G T C G T A A C G T C G T A A C G T G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:8
Score:0.52
Offset:6
Orientation:forward strand
Alignment:RAKASAKAWATATWTM----
------CTAATATTGCTAAA
 T C A G C G T A A C T G C G T A A T C G C G T A A C T G C G T A C G A T C G T A A C G T C G T A A C G T C G T A A C G T G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.51
Offset:5
Orientation:forward strand
Alignment:RAKASAKAWATATWTM
-----ATGAATATTC-
 T C A G C G T A A C T G C G T A A T C G C G T A A C T G C G T A C G A T C G T A A C G T C G T A A C G T C G T A A C G T G T C A
A C G T A C G T A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:RAKASAKAWATATWTM
---AAACAAACATTC-
 T C A G C G T A A C T G C G T A A T C G C G T A A C T G C G T A C G A T C G T A A C G T C G T A A C G T C G T A A C G T G T C A
A C G T A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T