Information for 1-TGGVGCAGCCTGGCTG (Motif 1)

C G A T C T A G A T C G T C G A A T C G A G T C G C T A A C T G A G T C A G T C G C A T A C T G A C T G A G T C A C G T A T C G
Reverse Opposite:
A T G C G T C A A C T G G T A C A G T C C G T A C T A G A C T G A G T C C G A T C T A G A T G C A C G T A T G C A G T C C G T A
p-value:1e-9
log p-value:-2.175e+01
Information Content per bp:1.768
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.06%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.8 +/- 24.4bp
Average Position of motif in Background69.5 +/- 13.3bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.61
Offset:9
Orientation:forward strand
Alignment:TGGVGCAGCCTGGCTG-
---------TWGTCTGV
 C G A T C T A G A T C G T C G A A T C G A G T C G C T A A C T G A G T C A G T C G C A T A C T G A C T G A G T C A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TGGVGCAGCCTGGCTG-
--GTCATGCHTGRCTGS
 C G A T C T A G A T C G T C G A A T C G A G T C G C T A A C T G A G T C A G T C G C A T A C T G A C T G A G T C A C G T A T C G A C G T
A C G T A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.57
Offset:9
Orientation:forward strand
Alignment:TGGVGCAGCCTGGCTG-
---------CTGTCTGG
 C G A T C T A G A T C G T C G A A T C G A G T C G C T A A C T G A G T C A G T C G C A T A C T G A C T G A G T C A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:7
Orientation:forward strand
Alignment:TGGVGCAGCCTGGCTG-
-------VBSYGTCTGG
 C G A T C T A G A T C G T C G A A T C G A G T C G C T A A C T G A G T C A G T C G C A T A C T G A C T G A G T C A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TGGVGCAGCCTGGCTG
-----CAGCC------
 C G A T C T A G A T C G T C G A A T C G A G T C G C T A A C T G A G T C A G T C G C A T A C T G A C T G A G T C A C G T A T C G
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:6
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TGGVGCAGCCTGGCTG---
----GGGGCTYGKCTGGGA
 C G A T C T A G A T C G T C G A A T C G A G T C G C T A A C T G A G T C A G T C G C A T A C T G A C T G A G T C A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:TGGVGCAGCCTGGCTG-
-NGTCACGCTTGGCTGC
 C G A T C T A G A T C G T C G A A T C G A G T C G C T A A C T G A G T C A G T C G C A T A C T G A C T G A G T C A C G T A T C G A C G T
A C G T C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:TGGVGCAGCCTGGCTG
--DCTCAGCAGG----
 C G A T C T A G A T C G T C G A A T C G A G T C G C T A A C T G A G T C A G T C G C A T A C T G A C T G A G T C A C G T A T C G
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:9
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:TGGVGCAGCCTGGCTG-----
------GGNGCGNCTGTTNNN
 C G A T C T A G A T C G T C G A A T C G A G T C G C T A A C T G A G T C A G T C G C A T A C T G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

PB0147.1_Max_2/Jaspar

Match Rank:10
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:TGGVGCAGCCTGGCTG
--NNGTCGCGTGNCAC
 C G A T C T A G A T C G T C G A A T C G A G T C G C T A A C T G A G T C A G T C G C A T A C T G A C T G A G T C A C G T A T C G
A C G T A C G T G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C