Information for 1-GYCARGGCAA (Motif 8)

T A C G A G T C A T G C T G C A C T G A A C T G T A C G A T G C G T C A C G T A
Reverse Opposite:
A C G T A C G T A T C G A T G C G T A C G A C T A C G T A T C G T C A G A T G C
p-value:1e-12
log p-value:-2.919e+01
Information Content per bp:1.636
Number of Target Sequences with motif105.0
Percentage of Target Sequences with motif16.61%
Number of Background Sequences with motif3502.1
Percentage of Background Sequences with motif7.78%
Average Position of motif in Targets49.1 +/- 26.7bp
Average Position of motif in Background49.9 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.71
Offset:3
Orientation:forward strand
Alignment:GYCARGGCAA----
---AAGGCAAGTGT
 T A C G A G T C A T G C T G C A C T G A A C T G T A C G A T G C G T C A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GYCARGGCAA--
--CAAGGHCANV
 T A C G A G T C A T G C T G C A C T G A A C T G T A C G A T G C G T C A C G T A A C G T A C G T
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GYCARGGCAA--
TTGCCATGGCAACN
 A C G T A C G T T A C G A G T C A T G C T G C A C T G A A C T G T A C G A T G C G T C A C G T A A C G T A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GYCARGGCAA
BTCAAGGTCA
 T A C G A G T C A T G C T G C A C T G A A C T G T A C G A T G C G T C A C G T A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GYCARGGCAA-
GTTGCCATGGCAAC
 A C G T A C G T A C G T T A C G A G T C A T G C T G C A C T G A A C T G T A C G A T G C G T C A C G T A A C G T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GYCARGGCAA
NTCAAGGTCA
 T A C G A G T C A T G C T G C A C T G A A C T G T A C G A T G C G T C A C G T A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GYCARGGCAA--
TTGCCATGGCAACC
 A C G T A C G T T A C G A G T C A T G C T G C A C T G A A C T G T A C G A T G C G T C A C G T A A C G T A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GYCARGGCAA---
GTTGCCATGGCAACCG
 A C G T A C G T A C G T T A C G A G T C A T G C T G C A C T G A A C T G T A C G A T G C G T C A C G T A A C G T A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

Nr5a2/MA0505.1/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GYCARGGCAA--
AAGTTCAAGGTCAGC
 A C G T A C G T A C G T T A C G A G T C A T G C T G C A C T G A A C T G T A C G A T G C G T C A C G T A A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GYCARGGCAA-
KGTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T T A C G A G T C A T G C T G C A C T G A A C T G T A C G A T G C G T C A C G T A A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C