Information for 20-TGCACTCAAGTAT (Motif 37)

A C G T A C T G A G T C C G T A A G T C C G A T A T G C C G T A G T C A C T A G A G C T C T G A G A C T
Reverse Opposite:
C T G A A G C T T C G A A G T C C A G T C G A T A T C G C G T A C T A G A C G T A C T G A G T C C G T A
p-value:1e-8
log p-value:-1.860e+01
Information Content per bp:1.715
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.69%
Number of Background Sequences with motif202.8
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets38.3 +/- 21.4bp
Average Position of motif in Background48.6 +/- 50.1bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0104.1_Zscan4_1/Jaspar

Match Rank:1
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------TGCACTCAAGTAT
TACATGTGCACATAAAA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C G A T A T G C C G T A G T C A C T A G A G C T C T G A G A C T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A A C G T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:2
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------TGCACTCAAGTAT
CAGATGTGCACATACGT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C G A T A T G C C G T A G T C A C T A G A G C T C T G A G A C T
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TGCACTCAAGTAT
AGCGGCACACACGCAA
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C G A T A T G C C G T A G T C A C T A G A G C T C T G A G A C T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TGCACTCAAGTAT
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C G A T A T G C C G T A G T C A C T A G A G C T C T G A G A C T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGCACTCAAGTAT
AGCCACTCAAG---
 A C G T A C G T A C T G A G T C C G T A A G T C C G A T A T G C C G T A G T C A C T A G A G C T C T G A G A C T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TGCACTCAAGTAT
NNTTTGCACACGGCCC-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C G A T A T G C C G T A G T C A C T A G A G C T C T G A G A C T
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGCACTCAAGTAT
TBGCACGCAA----
 A C G T A C G T A C T G A G T C C G T A A G T C C G A T A T G C C G T A G T C A C T A G A G C T C T G A G A C T
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGCACTCAAGTAT
ATTTGCATACAATGG-
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C G A T A T G C C G T A G T C A C T A G A G C T C T G A G A C T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGCACTCAAGTAT
AAGCACTTAA----
 A C G T A C G T A C T G A G T C C G T A A G T C C G A T A T G C C G T A G T C A C T A G A G C T C T G A G A C T
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGCACTCAAGTAT
AASCACTCAA----
 A C G T A C G T A C T G A G T C C G T A A G T C C G A T A T G C C G T A G T C A C T A G A G C T C T G A G A C T
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T