Information for 2-TWGCCCATGGATCTGA (Motif 3)

G C A T C G A T A C T G G A T C A G T C A G T C G T C A A C G T A C T G A T C G G C T A C G A T A G T C G A C T A C T G G T C A
Reverse Opposite:
A C G T A G T C C G T A A C T G G C T A C G A T A T G C G T A C C G T A A C G T A C T G C T A G C T A G G T A C G C T A C G T A
p-value:1e-13
log p-value:-3.221e+01
Information Content per bp:1.738
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.0 +/- 19.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TWGCCCATGGATCTGA
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A C G T A C G T G C A T C G A T A C T G G A T C A G T C A G T C G T C A A C G T A C T G A T C G G C T A C G A T A G T C G A C T A C T G G T C A
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

REST/MA0138.2/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TWGCCCATGGATCTGA-
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A C G T G C A T C G A T A C T G G A T C A G T C A G T C G T C A A C G T A C T G A T C G G C T A C G A T A G T C G A C T A C T G G T C A A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.55
Offset:7
Orientation:forward strand
Alignment:TWGCCCATGGATCTGA-
-------TGGAACAGMA
 G C A T C G A T A C T G G A T C A G T C A G T C G T C A A C G T A C T G A T C G G C T A C G A T A G T C G A C T A C T G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A

SOX9/MA0077.1/Jaspar

Match Rank:4
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TWGCCCATGGATCTGA
----CCATTGTTC---
 G C A T C G A T A C T G G A T C A G T C A G T C G T C A A C G T A C T G A T C G G C T A C G A T A G T C G A C T A C T G G T C A
A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TWGCCCATGGATCTGA
---NCCATTGTTC---
 G C A T C G A T A C T G G A T C A G T C A G T C G T C A A C G T A C T G A T C G G C T A C G A T A G T C G A C T A C T G G T C A
A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T

PB0040.1_Lef1_1/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TWGCCCATGGATCTGA-
AATCCCTTTGATCTATC
 G C A T C G A T A C T G G A T C A G T C A G T C G T C A A C G T A C T G A T C G G C T A C G A T A G T C G A C T A C T G G T C A A C G T
C T A G C T G A C G A T A G T C A G T C A G T C G A C T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G A C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.51
Offset:4
Orientation:forward strand
Alignment:TWGCCCATGGATCTGA
----CCATTGTTYB--
 G C A T C G A T A C T G G A T C A G T C A G T C G T C A A C G T A C T G A T C G G C T A C G A T A G T C G A C T A C T G G T C A
A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:8
Score:0.50
Offset:0
Orientation:forward strand
Alignment:TWGCCCATGGATCTGA-
ATTTCCTTTGATCTATA
 G C A T C G A T A C T G G A T C A G T C A G T C G T C A A C G T A C T G A T C G G C T A C G A T A G T C G A C T A C T G G T C A A C G T
C G T A C G A T C A G T A G C T A G T C A G T C G A C T G A C T C G A T A C T G C G T A C G A T T A G C G C A T C G T A C A G T T G C A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:TWGCCCATGGATCTGA
-TGACCTTGAN-----
 G C A T C G A T A C T G G A T C A G T C A G T C G T C A A C G T A C T G A T C G G C T A C G A T A G T C G A C T A C T G G T C A
A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:10
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:TWGCCCATGGATCTGA
--TNCCTTTGATGT--
 G C A T C G A T A C T G G A T C A G T C A G T C G T C A A C G T A C T G A T C G G C T A C G A T A G T C G A C T A C T G G T C A
A C G T A C G T C A G T A T G C A G T C A G T C A G C T A C G T A C G T T A C G C G T A C G A T T A C G G A C T A C G T A C G T