Information for 9-ATGCAGCTTGCAT (Motif 24)

C G T A A C G T A C T G T G A C G T C A A C T G G T A C A C G T A C G T A C T G A G T C C G T A A C G T
Reverse Opposite:
G T C A A C G T A C T G A G T C C G T A C G T A A C T G A G T C A C G T A C T G A G T C C G T A A C G T
p-value:1e-9
log p-value:-2.269e+01
Information Content per bp:1.934
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.0 +/- 22.3bp
Average Position of motif in Background40.3 +/- 11.9bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ATGCAGCTTGCAT
WYATGCATWATGCAT
 A C G T A C G T C G T A A C G T A C T G T G A C G T C A A C T G G T A C A C G T A C G T A C T G A G T C C G T A A C G T
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

Nr2e3/MA0164.1/Jaspar

Match Rank:2
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:ATGCAGCTTGCAT
---AAGCTTG---
 C G T A A C G T A C T G T G A C G T C A A C T G G T A C A C G T A C G T A C T G A G T C C G T A A C G T
A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ATGCAGCTTGCAT
TCATGAATWATTCAT
 A C G T A C G T C G T A A C G T A C T G T G A C G T C A A C T G G T A C A C G T A C G T A C T G A G T C C G T A A C G T
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:4
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:ATGCAGCTTGCAT---
------ATTGCATCAK
 C G T A A C G T A C T G T G A C G T C A A C T G G T A C A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:ATGCAGCTTGCAT
ATGCATAATTCA-
 C G T A A C G T A C T G T G A C G T C A A C T G G T A C A C G T A C G T A C T G A G T C C G T A A C G T
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:ATGCAGCTTGCAT--
---GGGATTGCATNN
 C G T A A C G T A C T G T G A C G T C A A C T G G T A C A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:7
Score:0.53
Offset:6
Orientation:forward strand
Alignment:ATGCAGCTTGCAT---
------ATTGCATCAT
 C G T A A C G T A C T G T G A C G T C A A C T G G T A C A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:ATGCAGCTTGCAT----
-------TTGCAACATN
 C G T A A C G T A C T G T G A C G T C A A C T G G T A C A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:ATGCAGCTTGCAT
----GGTTGGCAT
 C G T A A C G T A C T G T G A C G T C A A C T G G T A C A C G T A C G T A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:ATGCAGCTTGCAT-
---NNACTTGCCTT
 C G T A A C G T A C T G T G A C G T C A A C T G G T A C A C G T A C G T A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T