Information for 17-TTGAGTTGTT (Motif 42)

A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A A G T C C G T A C G T A A G T C A C G T A G T C C G T A C G T A
p-value:1e-5
log p-value:-1.227e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.0 +/- 18.5bp
Average Position of motif in Background79.6 +/- 5.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TTGAGTTGTT
CTTGAGTGGCT
 A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A C G T A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

PB0066.1_Sox17_1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TTGAGTTGTT---
NNATNAATTGTTTNN
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTGAGTTGTT
TTGACTTTT-
 A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A C G T A C G T
C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTGAGTTGTT
TTAAGTGCTT
 A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A C G T A C G T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TTGAGTTGTT
TTRAGTGSYK
 A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A C G T A C G T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

PB0067.1_Sox18_1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TTGAGTTGTT------
TTCAATTGTTCTAAAA
 A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTGAGTTGTT
TTGAGTGSTT
 A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A C G T A C G T
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTGAGTTGTT---
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

PH0004.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTGAGTTGTT---
NTNNTTAAGTGGTTANN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

PB0068.1_Sox1_1/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TTGAGTTGTT-
NNNTATTGAATTGNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A C G T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T