Information for 11-GAATCAHGCAGAACAC (Motif 18)

A C T G C T G A C T G A A C G T A G T C G T C A G C A T A C T G A T G C C G T A C T A G C G T A C G T A A G T C G T C A A G T C
Reverse Opposite:
C T A G A C G T A C T G C G A T G C A T A G T C A C G T A T C G G T A C C G T A A C G T C T A G C G T A A G C T A G C T G T A C
p-value:1e-11
log p-value:-2.570e+01
Information Content per bp:1.742
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.8 +/- 12.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1/MA0070.1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAATCAHGCAGAACAC
CCATCAATCAAA----
 A C T G C T G A C T G A A C G T A G T C G T C A G C A T A C T G A T G C C G T A C T A G C G T A C G T A A G T C G T C A A G T C
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GAATCAHGCAGAACAC
-AGTCACGC-------
 A C T G C T G A C T G A A C G T A G T C G T C A G C A T A C T G A T G C C G T A C T A G C G T A C G T A A G T C G T C A A G T C
A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ATF4/MA0833.1/Jaspar

Match Rank:3
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GAATCAHGCAGAACAC
GGATGATGCAATA---
 A C T G C T G A C T G A A C G T A G T C G T C A G C A T A C T G A T G C C G T A C T A G C G T A C G T A A G T C G T C A A G T C
C T A G C A T G T G C A A C G T C T A G C G T A A G C T C A T G G A T C G T C A G C T A A G C T T G C A A C G T A C G T A C G T

PB0144.1_Lef1_2/Jaspar

Match Rank:4
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GAATCAHGCAGAACAC
GAAGATCAATCACTTA--
 A C G T A C G T A C T G C T G A C T G A A C G T A G T C G T C A G C A T A C T G A T G C C G T A C T A G C G T A C G T A A G T C G T C A A G T C
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A A C G T A C G T

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:5
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GAATCAHGCAGAACAC
GAAGATCAATCACTAA--
 A C G T A C G T A C T G C T G A C T G A A C G T A G T C G T C A G C A T A C T G A T G C C G T A C T A G C G T A C G T A A G T C G T C A A G T C
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAATCAHGCAGAACAC
TCATCAATCA------
 A C T G C T G A C T G A A C G T A G T C G T C A G C A T A C T G A T G C C G T A C T A G C G T A C G T A A G T C G T C A A G T C
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GAATCAHGCAGAACAC
GYCATCMATCAT-----
 A C G T A C T G C T G A C T G A A C G T A G T C G T C A G C A T A C T G A T G C C G T A C T A G C G T A C G T A A G T C G T C A A G T C
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T A C G T A C G T

RXRA::VDR/MA0074.1/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GAATCAHGCAGAACAC
GGGTCAACGAGTTCA-
 A C T G C T G A C T G A A C G T A G T C G T C A G C A T A C T G A T G C C G T A C T A G C G T A C G T A A G T C G T C A A G T C
C T A G A C T G A C T G A C G T A G T C C T G A G C A T A G T C C T A G C T A G A C T G A C G T C G A T A G T C T C G A A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GAATCAHGCAGAACAC
-TBGCACGCAA-----
 A C T G C T G A C T G A A C G T A G T C G T C A G C A T A C T G A T G C C G T A C T A G C G T A C G T A A G T C G T C A A G T C
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GAATCAHGCAGAACAC-
TGGACCAATCAGCACTCT
 A C G T A C T G C T G A C T G A A C G T A G T C G T C A G C A T A C T G A T G C C G T A C T A G C G T A C G T A A G T C G T C A A G T C A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T