Information for 3-GGSTGACTGTGACMCA (Motif 6)

A C T G A C T G A T G C C A G T A T C G C G T A A T G C C A G T A T C G C A G T A T C G C G T A A G T C G T A C G T A C C G T A
Reverse Opposite:
C G A T A C T G A C T G A C T G A C G T A T G C G C T A A T G C G T C A A T C G A C G T T A G C G T C A A T C G A G T C A G T C
p-value:1e-14
log p-value:-3.245e+01
Information Content per bp:1.793
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.3 +/- 19.3bp
Average Position of motif in Background50.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PPARG/MA0066.1/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GGSTGACTGTGACMCA-
AGTAGGTCACNGTGACCTAC
 A C G T A C G T A C G T A C T G A C T G A T G C C A G T A T C G C G T A A T G C C A G T A T C G C A G T A T C G C G T A A G T C G T A C G T A C C G T A A C G T
G C T A A T C G C A G T C T G A C T A G A C T G C A G T A T G C G T C A G A T C T A G C A C T G C A G T A T C G T G C A G A T C A T G C A G C T C G T A A T G C

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGSTGACTGTGACMCA
NAGGTCACNNTGACC--
 A C G T A C T G A C T G A T G C C A G T A T C G C G T A A T G C C A G T A T C G C A G T A T C G C G T A A G T C G T A C G T A C C G T A
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGSTGACTGTGACMCA
AGGNCANNGTGACCT-
 A C T G A C T G A T G C C A G T A T C G C G T A A T G C C A G T A T C G C A G T A T C G C G T A A G T C G T A C G T A C C G T A
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T A C G T

ESR1/MA0112.3/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GGSTGACTGTGACMCA
CAGGTCACCGTGACCTT
 A C G T A C T G A C T G A T G C C A G T A T C G C G T A A T G C C A G T A T C G C A G T A T C G C G T A A G T C G T A C G T A C C G T A
T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGSTGACTGTGACMCA
GTAGGTCACTGGGTCA--
 A C G T A C G T A C T G A C T G A T G C C A G T A T C G C G T A A T G C C A G T A T C G C A G T A T C G C G T A A G T C G T A C G T A C C G T A
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GGSTGACTGTGACMCA
ATTGGACTTTGACCCC
 A C T G A C T G A T G C C A G T A T C G C G T A A T G C C A G T A T C G C A G T A T C G C G T A A G T C G T A C G T A C C G T A
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GGSTGACTGTGACMCA
--CTGTCTGTCACCT-
 A C T G A C T G A T G C C A G T A T C G C G T A A T G C C A G T A T C G C A G T A T C G C G T A A G T C G T A C G T A C C G T A
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GGSTGACTGTGACMCA
----GSCTGTCACTCA
 A C T G A C T G A T G C C A G T A T C G C G T A A T G C C A G T A T C G C A G T A T C G C G T A A G T C G T A C G T A C C G T A
A C G T A C G T A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

FOS::JUN/MA0099.2/Jaspar

Match Rank:9
Score:0.52
Offset:9
Orientation:forward strand
Alignment:GGSTGACTGTGACMCA
---------TGACTCA
 A C T G A C T G A T G C C A G T A T C G C G T A A T G C C A G T A T C G C A G T A T C G C G T A A G T C G T A C G T A C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G G T C A T G A C C G A T A T G C C G T A

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GGSTGACTGTGACMCA
TGCTGACTCA------
 A C T G A C T G A T G C C A G T A T C G C G T A A T G C C A G T A T C G C A G T A T C G C G T A A G T C G T A C G T A C C G T A
G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A A C G T A C G T A C G T A C G T A C G T A C G T