Information for 5-AAAATASCAAKGCTAK (Motif 6)

G T C A C G T A C G T A G T C A A C G T C G T A T A C G A G T C G T C A C G T A C A G T A C T G G T A C A C G T C G T A C A G T
Reverse Opposite:
G T C A A C G T C G T A A C T G A G T C G T C A A C G T A C G T C T A G A T G C A C G T G T C A A C G T A C G T A C G T C A G T
p-value:1e-12
log p-value:-2.802e+01
Information Content per bp:1.786
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets63.0 +/- 19.9bp
Average Position of motif in Background77.4 +/- 10.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0119.1_Foxa2_2/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAAATASCAAKGCTAK
AAAAATAACAAACGG--
 A C G T G T C A C G T A C G T A G T C A A C G T C G T A T A C G A G T C G T C A C G T A C A G T A C T G G T A C A C G T C G T A C A G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G A C G T A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AAAATASCAAKGCTAK
-AAAGATCAAAGG---
 G T C A C G T A C G T A G T C A A C G T C G T A T A C G A G T C G T C A C G T A C A G T A C T G G T A C A C G T C G T A C A G T
A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G A C G T A C G T A C G T

LEF1/MA0768.1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AAAATASCAAKGCTAK
-AAAGATCAAAGGGTT
 G T C A C G T A C G T A G T C A A C G T C G T A T A C G A G T C G T C A C G T A C A G T A C T G G T A C A C G T C G T A C A G T
A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

MEF2C/MA0497.1/Jaspar

Match Rank:4
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------AAAATASCAAKGCTAK
ATGCTAAAAATAGAA-------
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G T A G T C A A C G T C G T A T A C G A G T C G T C A C G T A C A G T A C T G G T A C A C G T C G T A C A G T
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0093.1_Zfp105_1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AAAATASCAAKGCTAK
AACAAACAACAAGAG---
 A C G T A C G T G T C A C G T A C G T A G T C A A C G T C G T A T A C G A G T C G T C A C G T A C A G T A C T G G T A C A C G T C G T A C A G T
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AAAATASCAAKGCTAK
GAAAAAATTGCAAGG----
 A C G T A C G T A C G T G T C A C G T A C G T A G T C A A C G T C G T A T A C G A G T C G T C A C G T A C A G T A C T G G T A C A C G T C G T A C A G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G A C G T A C G T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----AAAATASCAAKGCTAK
DCYAAAAATAGM--------
 A C G T A C G T A C G T A C G T G T C A C G T A C G T A G T C A A C G T C G T A T A C G A G T C G T C A C G T A C A G T A C T G G T A C A C G T C G T A C A G T
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:AAAATASCAAKGCTAK---
--------AAGGATATNTN
 G T C A C G T A C G T A G T C A A C G T C G T A T A C G A G T C G T C A C G T A C A G T A C T G G T A C A C G T C G T A C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

Sox1/MA0870.1/Jaspar

Match Rank:9
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:AAAATASCAAKGCTAK----
-----AACAATGNTATTGTT
 G T C A C G T A C G T A G T C A A C G T C G T A T A C G A G T C G T C A C G T A C A G T A C T G G T A C A C G T C G T A C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C T G A A G T C C T G A G T C A A C G T T A C G A G C T G C A T C G T A A C G T C A G T A C T G C G A T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:10
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----AAAATASCAAKGCTAK
GCTAAAAATAGC--------
 A C G T A C G T A C G T A C G T G T C A C G T A C G T A G T C A A C G T C G T A T A C G A G T C G T C A C G T A C A G T A C T G G T A C A C G T C G T A C A G T
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T