Information for 3-CACGSRCAGACGTYTG (Motif 5)

A G T C G T C A A G T C C T A G A T G C C T G A A G T C C G T A A T C G C G T A A G T C T A C G A C G T A G C T A C G T A C T G
Reverse Opposite:
A G T C G T C A T C G A G T C A A G T C A C T G A C G T A T G C G A C T C T A G G A C T T A C G A G T C A C T G A C G T A C T G
p-value:1e-13
log p-value:-3.124e+01
Information Content per bp:1.746
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.8 +/- 24.8bp
Average Position of motif in Background43.0 +/- 36.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CACGSRCAGACGTYTG
GCACGTNC---------
 A C G T A G T C G T C A A G T C C T A G A T G C C T G A A G T C C G T A A T C G C G T A A G T C T A C G A C G T A G C T A C G T A C T G
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CACGSRCAGACGTYTG
CACGCA----------
 A G T C G T C A A G T C C T A G A T G C C T G A A G T C C G T A A T C G C G T A A G T C T A C G A C G T A G C T A C G T A C T G
A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CACGSRCAGACGTYTG
GGCACGCGTC--------
 A C G T A C G T A G T C G T C A A G T C C T A G A T G C C T G A A G T C C G T A A T C G C G T A A G T C T A C G A C G T A G C T A C G T A C T G
T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CACGSRCAGACGTYTG
GCACGTAY---------
 A C G T A G T C G T C A A G T C C T A G A T G C C T G A A G T C C G T A A T C G C G T A A G T C T A C G A C G T A G C T A C G T A C T G
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CACGSRCAGACGTYTG
TBGCACGCAA---------
 A C G T A C G T A C G T A G T C G T C A A G T C C T A G A T G C C T G A A G T C C G T A A T C G C G T A A G T C T A C G A C G T A G C T A C G T A C T G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Id2/MA0617.1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CACGSRCAGACGTYTG
TCACGTGC---------
 A C G T A G T C G T C A A G T C C T A G A T G C C T G A A G T C C G T A A T C G C G T A A G T C T A C G A C G T A G C T A C G T A C T G
G A C T A G T C C G T A A G T C A C T G A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Arnt/MA0004.1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CACGSRCAGACGTYTG
CACGTG----------
 A G T C G T C A A G T C C T A G A T G C C T G A A G T C C G T A A T C G C G T A A G T C T A C G A C G T A G C T A C G T A C T G
A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CACGSRCAGACGTYTG
GCACGTACCC-------
 A C G T A G T C G T C A A G T C C T A G A T G C C T G A A G T C C G T A A T C G C G T A A G T C T A C G A C G T A G C T A C G T A C T G
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CACGSRCAGACGTYTG
CACGTGBN--------
 A G T C G T C A A G T C C T A G A T G C C T G A A G T C C G T A A T C G C G T A A G T C T A C G A C G T A G C T A C G T A C T G
G T A C C T G A A G T C C T A G G C A T C A T G A C G T G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcfl5/MA0632.1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CACGSRCAGACGTYTG
GGCACGTGCC--------
 A C G T A C G T A G T C G T C A A G T C C T A G A T G C C T G A A G T C C G T A A T C G C G T A A G T C T A C G A C G T A G C T A C G T A C T G
C T A G A C T G G T A C C T G A A G T C T C A G G A C T C A T G T G A C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T