Information for 5-YGRCCGMAGCSCA (Motif 4)

A G T C A T C G C T A G A G T C A G T C A C T G G T A C C G T A A C T G A G T C A T C G A G T C C G T A
Reverse Opposite:
A C G T A C T G A T G C A C T G A G T C A C G T A C T G A G T C A C T G A C T G A G T C A T G C T C A G
p-value:1e-13
log p-value:-3.124e+01
Information Content per bp:1.882
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.9 +/- 15.4bp
Average Position of motif in Background32.4 +/- 7.3bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:YGRCCGMAGCSCA
----NGAAGC---
 A G T C A T C G C T A G A G T C A G T C A C T G G T A C C G T A A C T G A G T C A T C G A G T C C G T A
A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:YGRCCGMAGCSCA
----CGGAGC---
 A G T C A T C G C T A G A G T C A G T C A C T G G T A C C G T A A C T G A G T C A T C G A G T C C G T A
A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:YGRCCGMAGCSCA-
--GCCTCAGGGCAT
 A G T C A T C G C T A G A G T C A G T C A C T G G T A C C G T A A C T G A G T C A T C G A G T C C G T A A C G T
A C G T A C G T A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.55
Offset:6
Orientation:forward strand
Alignment:YGRCCGMAGCSCA
------CAGCC--
 A G T C A T C G C T A G A G T C A G T C A C T G G T A C C G T A A C T G A G T C A T C G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

POL001.1_MTE/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---YGRCCGMAGCSCA---
TTTCGAGCGGAACGGTCGC
 A C G T A C G T A C G T A G T C A T C G C T A G A G T C A G T C A C T G G T A C C G T A A C T G A G T C A T C G A G T C C G T A A C G T A C G T A C G T
A C G T G A C T A G C T A G T C C T A G C G T A C T A G A G T C A T C G T A C G C G T A C T A G A G T C A C T G A T C G C G A T G A T C T A C G A G C T

Zfx/MA0146.2/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-YGRCCGMAGCSCA
CAGGCCNNGGCCNN
 A C G T A G T C A T C G C T A G A G T C A G T C A C T G G T A C C G T A A C T G A G T C A T C G A G T C C G T A
A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:7
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---YGRCCGMAGCSCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A G T C A T C G C T A G A G T C A G T C A C T G G T A C C G T A A C T G A G T C A T C G A G T C C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--YGRCCGMAGCSCA
AGAGTCCAAAGTCCA
 A C G T A C G T A G T C A T C G C T A G A G T C A G T C A C T G G T A C C G T A A C T G A G T C A T C G A G T C C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:YGRCCGMAGCSCA
TGCCCNNAGGGCA
 A G T C A T C G C T A G A G T C A G T C A C T G G T A C C G T A A C T G A G T C A T C G A G T C C G T A
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:YGRCCGMAGCSCA
TGCCCTNAGGGCA
 A G T C A T C G C T A G A G T C A G T C A C T G G T A C C G T A A C T G A G T C A T C G A G T C C G T A
G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A