Information for 25-CCAAGAGGCAGAC (Motif 33)

A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C G T A C T G A G T C A G T C A C G T A G T C A C G T A C G T A C T G A C T G
p-value:1e-5
log p-value:-1.153e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.5 +/- 19.3bp
Average Position of motif in Background44.5 +/- 9.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCAAGAGGCAGAC-
--AGGTGHCAGACA
 A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C A C G T
A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCAAGAGGCAGAC--
--AGGTGNCAGACAG
 A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:CCAAGAGGCAGAC----
-------CCAGACRSVB
 A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:CCAAGAGGCAGAC--
-------CCAGACAG
 A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:CCAAGAGGCAGAC--
-------BCAGACWA
 A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CCAAGAGGCAGAC
CCGCCCAAGGGCAG--
 A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G A C G T A C G T

TFAP2B/MA0811.1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CCAAGAGGCAGAC
TGCCCCAGGGCA---
 A C G T A C G T A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C
G A C T T A C G A T G C G A T C A G T C A G T C T C G A T C A G T C A G T A C G A T G C C T G A A C G T A C G T A C G T

TFAP2C/MA0524.2/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CCAAGAGGCAGAC
TGCCCCAGGGCA---
 A C G T A C G T A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C
G A C T T A C G T A G C G A T C A G T C A G T C T C G A T C A G C T A G T A C G A T G C C T G A A C G T A C G T A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCAAGAGGCAGAC
TGCCCCCGGGCA---
 A C G T A C G T A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C
G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CCAAGAGGCAGAC------
--CAAATCCAGACATCACA
 A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A