Information for 1-SWCWTACGTYCHT (Motif 3)

A T G C G C A T A T G C C G A T A G C T C T G A A G T C A C T G A G C T G A T C G T A C G A T C C A G T
Reverse Opposite:
G T C A C T A G C A T G C T A G C T G A A G T C C T A G A G C T T C G A G C T A T A C G C G T A T A C G
p-value:1e-17
log p-value:-4.010e+01
Information Content per bp:1.546
Number of Target Sequences with motif124.0
Percentage of Target Sequences with motif14.89%
Number of Background Sequences with motif2712.0
Percentage of Background Sequences with motif6.40%
Average Position of motif in Targets50.2 +/- 23.0bp
Average Position of motif in Background49.3 +/- 38.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GMEB2/MA0862.1/Jaspar

Match Rank:1
Score:0.84
Offset:3
Orientation:reverse strand
Alignment:SWCWTACGTYCHT
---TTACGTAA--
 A T G C G C A T A T G C C G A T A G C T C T G A A G T C A C T G A G C T G A T C G T A C G A T C C A G T
A C G T A C G T A C G T A C G T A C G T C T G A A T G C A C T G A G C T G T C A T G C A A C G T A C G T

Gmeb1/MA0615.1/Jaspar

Match Rank:2
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--SWCWTACGTYCHT--
NNNTNGTACGTAANNNN
 A C G T A C G T A T G C G C A T A T G C C G A T A G C T C T G A A G T C A C T G A G C T G A T C G T A C G A T C C A G T A C G T A C G T
A T G C A G T C T C G A G C A T A T G C C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T G C A T G A C C A G T T A G C

PB0027.1_Gmeb1_1/Jaspar

Match Rank:3
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--SWCWTACGTYCHT--
NNNTNGTACGTAANNNN
 A C G T A C G T A T G C G C A T A T G C C G A T A G C T C T G A A G T C A C T G A G C T G A T C G T A C G A T C C A G T A C G T A C G T
A T G C A G T C T C G A G C A T A T G C C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T G C A T G A C C A G T T A G C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.82
Offset:4
Orientation:forward strand
Alignment:SWCWTACGTYCHT
----TACGTGCV-
 A T G C G C A T A T G C C G A T A G C T C T G A A G T C A C T G A G C T G A T C G T A C G A T C C A G T
A C G T A C G T A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T

Atf1/MA0604.1/Jaspar

Match Rank:5
Score:0.80
Offset:4
Orientation:reverse strand
Alignment:SWCWTACGTYCHT
----TACGTCAT-
 A T G C G C A T A T G C C G A T A G C T C T G A A G T C A C T G A G C T G A T C G T A C G A T C C A G T
A C G T A C G T A C G T A C G T A G C T C T G A A G T C A C T G A C G T T G A C C G T A A G C T A C G T

Crem/MA0609.1/Jaspar

Match Rank:6
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:SWCWTACGTYCHT
---TTACGTCATN
 A T G C G C A T A T G C C G A T A G C T C T G A A G T C A C T G A G C T G A T C G T A C G A T C C A G T
A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C T G A C G T G T A C C G T A A G C T G T C A

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:7
Score:0.78
Offset:5
Orientation:reverse strand
Alignment:SWCWTACGTYCHT
-----ACGTCA--
 A T G C G C A T A T G C C G A T A G C T C T G A A G T C A C T G A G C T G A T C G T A C G A T C C A G T
A C G T A C G T A C G T A C G T A C G T C T G A A G T C T C A G A C G T G T A C C G T A A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:8
Score:0.76
Offset:3
Orientation:forward strand
Alignment:SWCWTACGTYCHT
---RTACGTGC--
 A T G C G C A T A T G C C G A T A G C T C T G A A G T C A C T G A G C T G A T C G T A C G A T C C A G T
A C G T A C G T A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:9
Score:0.75
Offset:3
Orientation:forward strand
Alignment:SWCWTACGTYCHT
---GCACGTACCC
 A T G C G C A T A T G C C G A T A G C T C T G A A G T C A C T G A G C T G A T C G T A C G A T C C A G T
A C G T A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:10
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:SWCWTACGTYCHT
---GCACGTNC--
 A T G C G C A T A T G C C G A T A G C T C T G A A G T C A C T G A G C T G A T C G T A C G A T C C A G T
A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T