Information for 15-CCCGCAGCGTGAG (Motif 23)

A G T C G T A C A G T C A T C G G T A C C G T A A C T G A G T C C T A G A C G T A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C C G T A A G T C A C T G A G T C A C G T A C T G A T G C A C T G A C T G A C T G
p-value:1e-9
log p-value:-2.101e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.4 +/- 18.4bp
Average Position of motif in Background41.4 +/- 13.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCCGCAGCGTGAG-
CCACACAGCAGGAGA
 A C G T A G T C G T A C A G T C A T C G G T A C C G T A A C T G A G T C C T A G A C G T A C T G C G T A A C T G A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCCGCAGCGTGAG-
CCACACAGCAGGAGA
 A C G T A G T C G T A C A G T C A T C G G T A C C G T A A C T G A G T C C T A G A C G T A C T G C G T A A C T G A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCCGCAGCGTGAG-
GAGCACAGCAGGACA
 A C G T A G T C G T A C A G T C A T C G G T A C C G T A A C T G A G T C C T A G A C G T A C T G C G T A A C T G A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CCCGCAGCGTGAG
TCAGNGAGCGTGAC
 A C G T A G T C G T A C A G T C A T C G G T A C C G T A A C T G A G T C C T A G A C G T A C T G C G T A A C T G
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCCGCAGCGTGAG
-DCTCAGCAGG--
 A G T C G T A C A G T C A T C G G T A C C G T A A C T G A G T C C T A G A C G T A C T G C G T A A C T G
A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCCGCAGCGTGAG---
-DCHCAGCAGGRGGCC
 A G T C G T A C A G T C A T C G G T A C C G T A A C T G A G T C C T A G A C G T A C T G C G T A A C T G A C G T A C G T A C G T
A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:7
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CCCGCAGCGTGAG
-----TGCGTG--
 A G T C G T A C A G T C A T C G G T A C C G T A A C T G A G T C C T A G A C G T A C T G C G T A A C T G
A C G T A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CCCGCAGCGTGAG-
--CACAGCAGGGGG
 A G T C G T A C A G T C A T C G G T A C C G T A A C T G A G T C C T A G A C G T A C T G C G T A A C T G A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0024.1_Gcm1_1/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CCCGCAGCGTGAG
TCGTACCCGCATCATT--
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G T C A T C G G T A C C G T A A C T G A G T C C T A G A C G T A C T G C G T A A C T G
G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCCGCAGCGTGAG---
-NCGCAGCGGGGGGTC
 A G T C G T A C A G T C A T C G G T A C C G T A A C T G A G T C C T A G A C G T A C T G C G T A A C T G A C G T A C G T A C G T
A C G T C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C