Information for 13-STCKSWGCCTSGCAGY (Motif 21)

A T G C A C G T A T G C A C G T A T C G C G A T A C T G A G T C A G T C A C G T A T C G A C T G A G T C C G T A A C T G A G C T
Reverse Opposite:
C T G A A G T C A C G T A C T G A G T C A T G C C G T A A C T G A C T G A G T C C G T A A T G C G T C A A T C G C G T A A T C G
p-value:1e-8
log p-value:-2.020e+01
Information Content per bp:1.855
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.8 +/- 22.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:STCKSWGCCTSGCAGY
-------CTTGGCAA-
 A T G C A C G T A T G C A C G T A T C G C G A T A C T G A G T C A G T C A C G T A T C G A C T G A G T C C G T A A C T G A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:forward strand
Alignment:STCKSWGCCTSGCAGY-
----CTGTCTGTCACCT
 A T G C A C G T A T G C A C G T A T C G C G A T A C T G A G T C A G T C A C G T A T C G A C T G A G T C C G T A A C T G A G C T A C G T
A C G T A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:STCKSWGCCTSGCAGY-
-----TGTCTGDCACCT
 A T G C A C G T A T G C A C G T A T C G C G A T A C T G A G T C A G T C A C G T A T C G A C T G A G T C C G T A A C T G A G C T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.54
Offset:-8
Orientation:forward strand
Alignment:--------STCKSWGCCTSGCAGY
GAGCCTGGTACTGWGCCTGR----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C G T A T G C A C G T A T C G C G A T A C T G A G T C A G T C A C G T A T C G A C T G A G T C C G T A A C T G A G C T
T A C G C T G A C A T G G A T C G T A C G C A T T C A G T A C G A G C T G T C A G A T C G C A T T A C G C G T A C T A G G A T C G A T C C G A T A C T G T C A G A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.53
Offset:6
Orientation:forward strand
Alignment:STCKSWGCCTSGCAGY
------VGCTGWCAVB
 A T G C A C G T A T G C A C G T A T C G C G A T A C T G A G T C A G T C A C G T A T C G A C T G A G T C C G T A A C T G A G C T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--STCKSWGCCTSGCAGY--
TTATCTGNNNNCNNCAGCNG
 A C G T A C G T A T G C A C G T A T G C A C G T A T C G C G A T A C T G A G T C A G T C A C G T A T C G A C T G A G T C C G T A A C T G A G C T A C G T A C G T
G A C T G C A T C T G A A C G T A G T C C G A T A T C G G A C T A T C G T A G C T A G C T A G C G T A C T A C G G T A C C G T A A T C G T A G C G A T C A C T G

Myb/MA0100.2/Jaspar

Match Rank:7
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:STCKSWGCCTSGCAGY---
---------TGGCAGTTGN
 A T G C A C G T A T G C A C G T A T C G C G A T A C T G A G T C A G T C A C G T A T C G A C T G A G T C C G T A A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

PB0199.1_Zfp161_2/Jaspar

Match Rank:8
Score:0.52
Offset:6
Orientation:forward strand
Alignment:STCKSWGCCTSGCAGY----
------GCCGCGCAGTGCGT
 A T G C A C G T A T G C A C G T A T C G C G A T A C T G A G T C A G T C A C G T A T C G A C T G A G T C C G T A A C T G A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:STCKSWGCCTSGCAGY
-TGGCAGNCTGCCAG-
 A T G C A C G T A T G C A C G T A T C G C G A T A C T G A G T C A G T C A C G T A T C G A C T G A G T C C G T A A C T G A G C T
A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:STCKSWGCCTSGCAGY
----BTGABTGACAGS
 A T G C A C G T A T G C A C G T A T C G C G A T A C T G A G T C A G T C A C G T A T C G A C T G A G T C C G T A A C T G A G C T
A C G T A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C