Information for 6-GWGGATBTSCATT (Motif 18)

A C T G G C A T A C T G T C A G T G C A A C G T A T C G G C A T A T C G A T G C G T C A A G C T C A G T
Reverse Opposite:
G T C A C T G A A C G T A T C G A T G C C G T A T A G C C G T A A C G T A G T C A G T C C G T A A G T C
p-value:1e-8
log p-value:-2.054e+01
Information Content per bp:1.698
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.74%
Number of Background Sequences with motif73.4
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets47.2 +/- 26.7bp
Average Position of motif in Background50.4 +/- 37.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU2F2/MA0507.1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GWGGATBTSCATT-
-TTCATTTGCATAT
 A C T G G C A T A C T G T C A G T G C A A C G T A T C G G C A T A T C G A T G C G T C A A G C T C A G T A C G T
A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GWGGATBTSCATT
-BTVATTWGCATA
 A C T G G C A T A C T G T C A G T G C A A C G T A T C G G C A T A T C G A T G C G T C A A G C T C A G T
A C G T A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GWGGATBTSCATT-
----ATTTGCATAA
 A C T G G C A T A C T G T C A G T G C A A C G T A T C G G C A T A T C G A T G C G T C A A G C T C A G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GWGGATBTSCATT
GGGGATTTCC---
 A C T G G C A T A C T G T C A G T G C A A C G T A T C G G C A T A T C G A T G C G T C A A G C T C A G T
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GWGGATBTSCATT
--GHATATKCAT-
 A C T G G C A T A C T G T C A G T G C A A C G T A T C G G C A T A T C G A T G C G T C A A G C T C A G T
A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GWGGATBTSCATT
GGGAATTTCC---
 A C T G G C A T A C T G T C A G T G C A A C G T A T C G G C A T A T C G A T G C G T C A A G C T C A G T
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GWGGATBTSCATT
GGGAATTTCC---
 A C T G G C A T A C T G T C A G T G C A A C G T A T C G G C A T A T C G A T G C G T C A A G C T C A G T
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GWGGATBTSCATT
----ATTTGCATA
 A C T G G C A T A C T G T C A G T G C A A C G T A T C G G C A T A T C G A T G C G T C A A G C T C A G T
A C G T A C G T A C G T A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GWGGATBTSCATT-
----ATTTGCATAT
 A C T G G C A T A C T G T C A G T G C A A C G T A T C G G C A T A T C G A T G C G T C A A G C T C A G T A C G T
A C G T A C G T A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GWGGATBTSCATT
-CTCATTTGCATW
 A C T G G C A T A C T G T C A G T G C A A C G T A T C G G C A T A T C G A T G C G T C A A G C T C A G T
A C G T A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A