Information for 19-YCTTGCTAATTAC (Motif 33)

A G T C A G T C A C G T A C G T A C T G A G T C A G C T G C T A C G T A A C G T G C A T G C T A A G T C
Reverse Opposite:
A C T G C A G T C G T A G T C A A C G T C A G T C T G A A C T G T A G C C G T A C G T A C T A G C T A G
p-value:1e-4
log p-value:-1.016e+01
Information Content per bp:1.758
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif78.9
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets35.8 +/- 23.6bp
Average Position of motif in Background44.6 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0061.1_Hoxb6/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:YCTTGCTAATTAC---
TATTGGTAATTACCTT
 A G T C A G T C A C G T A C G T A C T G A G T C A G C T G C T A C G T A A C G T G C A T G C T A A G T C A C G T A C G T A C G T
G C A T G C T A C A G T C A G T A T C G A C T G A G C T G T C A C G T A C G A T C A G T C T G A G T A C T A G C C A G T A G C T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:2
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:YCTTGCTAATTAC
----NCTAATTA-
 A G T C A G T C A C G T A C G T A C T G A G T C A G C T G C T A C G T A A C G T G C A T G C T A A G T C
A C G T A C G T A C G T A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T

VAX2/MA0723.1/Jaspar

Match Rank:3
Score:0.62
Offset:5
Orientation:forward strand
Alignment:YCTTGCTAATTAC
-----CTAATTAC
 A G T C A G T C A C G T A C G T A C T G A G T C A G C T G C T A C G T A A C G T G C A T G C T A A G T C
A C G T A C G T A C G T A C G T A C G T A G T C G A C T G T C A G C T A C G A T C A G T C T G A A G T C

VSX2/MA0726.1/Jaspar

Match Rank:4
Score:0.61
Offset:5
Orientation:forward strand
Alignment:YCTTGCTAATTAC
-----CTAATTAG
 A G T C A G T C A C G T A C G T A C T G A G T C A G C T G C T A C G T A A C G T G C A T G C T A A G T C
A C G T A C G T A C G T A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G

PH0052.1_Hoxa5/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:YCTTGCTAATTAC---
NTGAGCTAATTACCNT
 A G T C A G T C A C G T A C G T A C T G A G T C A G C T G C T A C G T A A C G T G C A T G C T A A G T C A C G T A C G T A C G T
G A T C G C A T C A T G C G T A C T A G A T G C G A C T G T C A G T C A A C G T A C G T C T G A T G A C G A T C A C T G A G C T

VSX1/MA0725.1/Jaspar

Match Rank:6
Score:0.61
Offset:5
Orientation:forward strand
Alignment:YCTTGCTAATTAC
-----CTAATTAT
 A G T C A G T C A C G T A C G T A C T G A G T C A G C T G C T A C G T A A C G T G C A T G C T A A G T C
A C G T A C G T A C G T A C G T A C G T G A T C G A C T G T C A T C G A G A C T C A G T C T G A A C G T

VAX1/MA0722.1/Jaspar

Match Rank:7
Score:0.61
Offset:5
Orientation:forward strand
Alignment:YCTTGCTAATTAC
-----CTAATTAC
 A G T C A G T C A C G T A C G T A C T G A G T C A G C T G C T A C G T A A C G T G C A T G C T A A G T C
A C G T A C G T A C G T A C G T A C G T A G T C G A C T G T C A G T C A C G A T C A G T C T G A G A T C

MEOX1/MA0661.1/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:forward strand
Alignment:YCTTGCTAATTAC-
----GCTAATTAAC
 A G T C A G T C A C G T A C G T A C T G A G T C A G C T G C T A C G T A A C G T G C A T G C T A A G T C A C G T
A C G T A C G T A C G T A C G T T C A G T A G C G A C T T G C A C G T A G A C T A C G T C T G A G T C A T A G C

PH0081.1_Pdx1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:YCTTGCTAATTAC---
NTGNGCTAATTACCNN
 A G T C A G T C A C G T A C G T A C T G A G T C A G C T G C T A C G T A A C G T G C A T G C T A A G T C A C G T A C G T A C G T
G T C A G A C T A T C G C G T A C T A G A T G C G A C T T G C A G C T A C A G T A C G T C T G A T A G C G A T C A C G T A C G T

EMX2/MA0886.1/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:YCTTGCTAATTAC-
----NCTAATTANN
 A G T C A G T C A C G T A C G T A C T G A G T C A G C T G C T A C G T A A C G T G C A T G C T A A G T C A C G T
A C G T A C G T A C G T A C G T T A C G A G T C A C G T G T C A C G T A A C G T C A G T C T G A T A C G A G T C