Information for 9-SMMTGCWGCTGWGCGT (Motif 19)

A T G C G T A C T G A C A G C T A C T G A G T C G C A T A C T G A G T C A C G T A C T G C G A T A C T G A G T C A T C G A C G T
Reverse Opposite:
C G T A A T G C A C T G A G T C C G T A A G T C C G T A A C T G A G T C C G T A A C T G A G T C C T G A A C G T A C T G A T C G
p-value:1e-8
log p-value:-1.985e+01
Information Content per bp:1.855
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.8 +/- 27.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-SMMTGCWGCTGWGCGT
GGCCYCCTGCTGDGH--
 A C G T A T G C G T A C T G A C A G C T A C T G A G T C G C A T A C T G A G T C A C G T A C T G C G A T A C T G A G T C A T C G A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:SMMTGCWGCTGWGCGT
---CGCAGCTGCG---
 A T G C G T A C T G A C A G C T A C T G A G T C G C A T A C T G A G T C A C G T A C T G C G A T A C T G A G T C A T C G A C G T
A C G T A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:SMMTGCWGCTGWGCGT
-CCCCCTGCTGTG---
 A T G C G T A C T G A C A G C T A C T G A G T C G C A T A C T G A G T C A C G T A C T G C G A T A C T G A G T C A T C G A C G T
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:4
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:SMMTGCWGCTGWGCGT
----GCAGCTGTNN--
 A T G C G T A C T G A C A G C T A C T G A G T C G C A T A C T G A G T C A C G T A C T G C G A T A C T G A G T C A T C G A C G T
A C G T A C G T A C G T A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:SMMTGCWGCTGWGCGT
--CAGCAGCTGN----
 A T G C G T A C T G A C A G C T A C T G A G T C G C A T A C T G A G T C A C G T A C T G C G A T A C T G A G T C A T C G A C G T
A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:SMMTGCWGCTGWGCGT
---ANCAGCTG-----
 A T G C G T A C T G A C A G C T A C T G A G T C G C A T A C T G A G T C A C G T A C T G C G A T A C T G A G T C A T C G A C G T
A C G T A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:SMMTGCWGCTGWGCGT
--NNGCAGCTGTT---
 A T G C G T A C T G A C A G C T A C T G A G T C G C A T A C T G A G T C A C G T A C T G C G A T A C T G A G T C A T C G A C G T
A C G T A C G T A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:SMMTGCWGCTGWGCGT
--NNGCAGCTGTC---
 A T G C G T A C T G A C A G C T A C T G A G T C G C A T A C T G A G T C A C G T A C T G C G A T A C T G A G T C A T C G A C G T
A C G T A C G T A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:SMMTGCWGCTGWGCGT
---TGCAGCTGTCCCT
 A T G C G T A C T G A C A G C T A C T G A G T C G C A T A C T G A G T C A C G T A C T G C G A T A C T G A G T C A T C G A C G T
A C G T A C G T A C G T G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:SMMTGCWGCTGWGCGT
-TNTCCTGCTGTGNNG
 A T G C G T A C T G A C A G C T A C T G A G T C G C A T A C T G A G T C A C G T A C T G C G A T A C T G A G T C A T C G A C G T
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G