Information for 4-CCTCTAGTGGACA (Motif 4)

G T A C G T A C G C A T A G T C G A C T C T G A C T A G C G A T C A T G C T A G T C G A T G A C C T G A
Reverse Opposite:
G A C T A C T G A G C T G A T C G A T C G C T A G A T C G A C T C T G A T A C G C G T A A C T G A C T G
p-value:1e-27
log p-value:-6.255e+01
Information Content per bp:1.650
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif5.18%
Number of Background Sequences with motif265.4
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets52.4 +/- 20.7bp
Average Position of motif in Background50.7 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.69
Offset:-7
Orientation:forward strand
Alignment:-------CCTCTAGTGGACA
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C G T A C G C A T A G T C G A C T C T G A C T A G C G A T C A T G C T A G T C G A T G A C C T G A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------CCTCTAGTGGACA
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C G T A C G C A T A G T C G A C T C T G A C T A G C G A T C A T G C T A G T C G A T G A C C T G A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCTCTAGTGGACA------
GCCASCAGGGGGCGCYVNNG
 A C G T G T A C G T A C G C A T A G T C G A C T C T G A C T A G C G A T C A T G C T A G T C G A T G A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PH0111.1_Nkx2-2/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTAGTGGACA-
NANTTTCAAGTGGTTAN
 A C G T A C G T A C G T G T A C G T A C G C A T A G T C G A C T C T G A C T A G C G A T C A T G C T A G T C G A T G A C C T G A A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

PB0118.1_Esrra_2/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCTCTAGTGGACA-----
-GGCGAGGGGTCAAGGGC
 G T A C G T A C G C A T A G T C G A C T C T G A C T A G C G A T C A T G C T A G T C G A T G A C C T G A A C G T A C G T A C G T A C G T A C G T
A C G T T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCTCTAGTGGACA
-BTBRAGTGSN--
 G T A C G T A C G C A T A G T C G A C T C T G A C T A G C G A T C A T G C T A G T C G A T G A C C T G A
A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCTCTAGTGGACA
-NTCAAGTGG---
 G T A C G T A C G C A T A G T C G A C T C T G A C T A G C G A T C A T G C T A G T C G A T G A C C T G A
A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCTCTAGTGGACA
-NTCAAGTGGN--
 G T A C G T A C G C A T A G T C G A C T C T G A C T A G C G A T C A T G C T A G T C G A T G A C C T G A
A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CCTCTAGTGGACA
-----AGRGGTCA
 G T A C G T A C G C A T A G T C G A C T C T G A C T A G C G A T C A T G C T A G T C G A T G A C C T G A
A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CCTCTAGTGGACA
-CTYRAGTGSY--
 G T A C G T A C G C A T A G T C G A C T C T G A C T A G C G A T C A T G C T A G T C G A T G A C C T G A
A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T