Information for 17-GTTATACADKTTA (Motif 29)

C T A G G A C T G C A T G C T A G A C T C G T A T G A C G C T A C T A G C A T G A C G T C G A T T C G A
Reverse Opposite:
A G C T C G T A T G C A G T A C G A T C C A G T A C T G G C A T C T G A C G A T C G T A C T G A G A T C
p-value:1e-8
log p-value:-1.937e+01
Information Content per bp:1.601
Number of Target Sequences with motif66.0
Percentage of Target Sequences with motif8.86%
Number of Background Sequences with motif1962.4
Percentage of Background Sequences with motif4.03%
Average Position of motif in Targets49.5 +/- 25.3bp
Average Position of motif in Background49.8 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0085.1_Irx4/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GTTATACADKTTA---
NNTTTTACATGTANNNT
 A C G T C T A G G A C T G C A T G C T A G A C T C G T A T G A C G C T A C T A G C A T G A C G T C G A T T C G A A C G T A C G T A C G T
G C A T T A C G G C A T G C A T C A G T C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G A C T C G T A G C A T G C A T

PH0083.1_Irx3_1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GTTATACADKTTA---
ANTATTACATGTANNNN
 A C G T C T A G G A C T G C A T G C T A G A C T C G T A T G A C G C T A C T A G C A T G A C G T C G A T T C G A A C G T A C G T A C G T
G C T A C T A G G C A T G C T A A C G T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A A G C T G C A T G A C T G C A T

PH0086.1_Irx5/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTTATACADKTTA---
ANTNNTACATGTANNTN
 A C G T C T A G G A C T G C A T G C T A G A C T C G T A T G A C G C T A C T A G C A T G A C G T C G A T T C G A A C G T A C G T A C G T
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T

PH0046.1_Hoxa10/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GTTATACADKTTA
TAGGTAATAAAATTCA
 A C G T A C G T A C G T C T A G G A C T G C A T G C T A G A C T C G T A T G A C G C T A C T A G C A T G A C G T C G A T T C G A
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

PH0084.1_Irx3_2/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GTTATACADKTTA---
NNTATTACATGTANNNT
 A C G T C T A G G A C T G C A T G C T A G A C T C G T A T G A C G C T A C T A G C A T G A C G T C G A T T C G A A C G T A C G T A C G T
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T

PH0012.1_Cdx1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GTTATACADKTTA
TAAGGTAATAAAATTA-
 A C G T A C G T A C G T A C G T C T A G G A C T G C A T G C T A G A C T C G T A T G A C G C T A C T A G C A T G A C G T C G A T T C G A
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GTTATACADKTTA
AAAGGTAATAAAATTT-
 A C G T A C G T A C G T A C G T C T A G G A C T G C A T G C T A G A C T C G T A T G A C G C T A C T A G C A T G A C G T C G A T T C G A
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T A C G T

PH0082.1_Irx2/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GTTATACADKTTA----
TAAATACATGTAAAATT
 C T A G G A C T G C A T G C T A G A C T C G T A T G A C G C T A C T A G C A T G A C G T C G A T T C G A A C G T A C G T A C G T A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

PH0087.1_Irx6/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTTATACADKTTA---
ANTTNTACATGTANTTN
 A C G T C T A G G A C T G C A T G C T A G A C T C G T A T G A C G C T A C T A G C A T G A C G T C G A T T C G A A C G T A C G T A C G T
G C T A C G A T C G A T G C A T A C G T C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G A C T C G A T C G A T C G A T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTTATACADKTTA
GTCATAAAAN---
 C T A G G A C T G C A T G C T A G A C T C G T A T G A C G C T A C T A G C A T G A C G T C G A T T C G A
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T