Information for 3-TGAGCTGCAA (Motif 19)

C A G T A T C G C T G A C A T G G T A C A G C T T C A G T G A C G C T A C G T A
Reverse Opposite:
G C A T C G A T A C T G A G T C T C G A C A T G G T A C G A C T T A G C G T C A
p-value:1e-9
log p-value:-2.179e+01
Information Content per bp:1.680
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif6.04%
Number of Background Sequences with motif1003.7
Percentage of Background Sequences with motif2.06%
Average Position of motif in Targets54.3 +/- 24.2bp
Average Position of motif in Background50.5 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGAGCTGCAA
TGACCTTGAT
 C A G T A T C G C T G A C A T G G T A C A G C T T C A G T G A C G C T A C G T A
A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGAGCTGCAA
TGACCT----
 C A G T A T C G C T G A C A T G G T A C A G C T T C A G T G A C G C T A C G T A
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGAGCTGCAA
ATGACCTTGAA
 A C G T C A G T A T C G C T G A C A T G G T A C A G C T T C A G T G A C G C T A C G T A
C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGAGCTGCAA
GTGACCTT---
 A C G T C A G T A T C G C T G A C A T G G T A C A G C T T C A G T G A C G C T A C G T A
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TGAGCTGCAA----
--AGATGCAATCCC
 C A G T A T C G C T G A C A T G G T A C A G C T T C A G T G A C G C T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C

Esrrg/MA0643.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGAGCTGCAA
ATGACCTTGA-
 A C G T C A G T A T C G C T G A C A T G G T A C A G C T T C A G T G A C G C T A C G T A
C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TGAGCTGCAA--
CATTGTTATGCAAAT
 A C G T A C G T A C G T C A G T A T C G C T G A C A T G G T A C A G C T T C A G T G A C G C T A C G T A A C G T A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TGAGCTGCAA--
CTTTGTTATGCAAAT
 A C G T A C G T A C G T C A G T A T C G C T G A C A T G G T A C A G C T T C A G T G A C G C T A C G T A A C G T A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGAGCTGCAA
TGACCTYA--
 C A G T A T C G C T G A C A T G G T A C A G C T T C A G T G A C G C T A C G T A
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGAGCTGCAA
NTGACCTTGA-
 A C G T C A G T A T C G C T G A C A T G G T A C A G C T T C A G T G A C G C T A C G T A
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T