Information for 9-TTTGCAGACTAGATGT (Motif 18)

A C G T A C G T A C G T A T C G G T A C C G T A A C T G C G T A A G T C A C G T C T G A A C T G G T C A C G A T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A A C G T A G T C A G C T C G T A A C T G C G A T A G T C A C G T A C T G A T G C C G T A C G T A C G T A
p-value:1e-9
log p-value:-2.226e+01
Information Content per bp:1.925
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.8 +/- 29.5bp
Average Position of motif in Background65.1 +/- 13.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TTTGCAGACTAGATGT
---BCAGACWA-----
 A C G T A C G T A C G T A T C G G T A C C G T A A C T G C G T A A G T C A C G T C T G A A C T G G T C A C G A T A C T G A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

PB0041.1_Mafb_1/Jaspar

Match Rank:2
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TTTGCAGACTAGATGT
AAATTTGCTGACTTAGA--
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G G T A C C G T A A C T G C G T A A G T C A C G T C T G A A C T G G T C A C G A T A C T G A C G T
G C T A C T G A C G T A G C A T C A G T G C A T C A T G G T A C G C A T C A T G C G T A A G T C C G A T G C A T C T G A C T A G G T A C A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:3
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----TTTGCAGACTAGATGT
TNTAATTTGCATACNA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G G T A C C G T A A C T G C G T A A G T C A C G T C T G A A C T G G T C A C G A T A C T G A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:4
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----TTTGCAGACTAGATGT
TNTAATTTGCATACNA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G G T A C C G T A A C T G C G T A A G T C A C G T C T G A A C T G G T C A C G A T A C T G A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TTTGCAGACTAGATGT
TNTAATTTGCATANNN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G G T A C C G T A A C T G C G T A A G T C A C G T C T G A A C T G G T C A C G A T A C T G A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:6
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--TTTGCAGACTAGATGT
AATTTGCATANT------
 A C G T A C G T A C G T A C G T A C G T A T C G G T A C C G T A A C T G C G T A A G T C A C G T C T G A A C T G G T C A C G A T A C T G A C G T
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TTTGCAGACTAGATGT
---CCAGACRSVB---
 A C G T A C G T A C G T A T C G G T A C C G T A A C T G C G T A A G T C A C G T C T G A A C T G G T C A C G A T A C T G A C G T
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TTTGCAGACTAGATGT
ATTTGCATAT-------
 A C G T A C G T A C G T A C G T A T C G G T A C C G T A A C T G C G T A A G T C A C G T C T G A A C T G G T C A C G A T A C T G A C G T
G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TTTGCAGACTAGATGT
ATTTGCATAA-------
 A C G T A C G T A C G T A C G T A T C G G T A C C G T A A C T G C G T A A G T C A C G T C T G A A C T G G T C A C G A T A C T G A C G T
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0042.1_Mafk_1/Jaspar

Match Rank:10
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----TTTGCAGACTAGATGT
TAAAAATGCTGACTT-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G G T A C C G T A A C T G C G T A A G T C A C G T C T G A A C T G G T C A C G A T A C T G A C G T
C G A T C G T A C G T A C G T A G C T A C G T A G A C T C A T G G T A C G C A T C A T G C G T A A G T C G C A T G A C T A C G T A C G T A C G T A C G T A C G T