Information for 10-TCAGGGCTTCACA (Motif 17)

A G C T G T A C C T G A A C T G A C T G A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G C G A T A C T G C G T A C G T A A C T G A G T C A G T C A G T C G A C T A C T G C T G A
p-value:1e-9
log p-value:-2.226e+01
Information Content per bp:1.916
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.4 +/- 26.5bp
Average Position of motif in Background57.7 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.61
Offset:5
Orientation:forward strand
Alignment:TCAGGGCTTCACA
-----GCTTCC--
 A G C T G T A C C T G A A C T G A C T G A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:2
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:TCAGGGCTTCACA----
------CTTCACACCTA
 A G C T G T A C C T G A A C T G A C T G A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:3
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:TCAGGGCTTCACA----
-------TTMACACCTT
 A G C T G T A C C T G A A C T G A C T G A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

TBX21/MA0690.1/Jaspar

Match Rank:4
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:TCAGGGCTTCACA----
-------TTCACACCTT
 A G C T G T A C C T G A A C T G A C T G A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T T G A C C T G A G T A C T C G A T G A C G A T C G A C T G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TCAGGGCTTCACA
---CGGTTTCAAA
 A G C T G T A C C T G A A C T G A C T G A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A
A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

PH0137.1_Pitx1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TCAGGGCTTCACA--
TTAGAGGGATTAACAAT
 A C G T A C G T A G C T G T A C C T G A A C T G A C T G A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

TBR1/MA0802.1/Jaspar

Match Rank:7
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:TCAGGGCTTCACA---
------TTTCACACCT
 A G C T G T A C C T G A A C T G A C T G A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T

PB0013.1_Eomes_1/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TCAGGGCTTCACA-------
---NNTTTTCACACCTTNNN
 A G C T G T A C C T G A A C T G A C T G A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TCAGGGCTTCACA
CNAGGCCT-----
 A G C T G T A C C T G A A C T G A C T G A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:forward strand
Alignment:TCAGGGCTTCACA--
-----HTTTCCCASG
 A G C T G T A C C T G A A C T G A C T G A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G