Information for 7-SAGCGCTGCCGGSGGC (Motif 13)

A T G C T G C A A C T G G A T C A C T G A G T C G A C T A C T G A G T C G A T C A C T G A C T G A T G C C T A G A C T G A G T C
Reverse Opposite:
C T A G G T A C G A T C A T C G A G T C G T A C C T A G A C T G A G T C C T G A A C T G A G T C C T A G A G T C A C G T A T C G
p-value:1e-11
log p-value:-2.571e+01
Information Content per bp:1.771
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.2 +/- 22.9bp
Average Position of motif in Background22.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:SAGCGCTGCCGGSGGC-
--DCHCAGCAGGRGGCC
 A T G C T G C A A C T G G A T C A C T G A G T C G A C T A C T G A G T C G A T C A C T G A C T G A T G C C T A G A C T G A G T C A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

ZIC3/MA0697.1/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:SAGCGCTGCCGGSGGC-
--NCGCAGCGGGGGGTC
 A T G C T G C A A C T G G A T C A C T G A G T C G A C T A C T G A G T C G A T C A C T G A C T G A T G C C T A G A C T G A G T C A C G T
A C G T A C G T C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC4/MA0751.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:SAGCGCTGCCGGSGGC-
--NCNCAGCGGGGGGTC
 A T G C T G C A A C T G G A T C A C T G A G T C G A C T A C T G A G T C G A T C A C T G A C T G A T G C C T A G A C T G A G T C A C G T
A C G T A C G T C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

ZIC1/MA0696.1/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:SAGCGCTGCCGGSGGC-
---CACAGCGGGGGGTC
 A T G C T G C A A C T G G A T C A C T G A G T C G A C T A C T G A G T C G A T C A C T G A C T G A T G C C T A G A C T G A G T C A C G T
A C G T A C G T A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:SAGCGCTGCCGGSGGC
CCACACAGCAGGAGA-
 A T G C T G C A A C T G G A T C A C T G A G T C G A C T A C T G A G T C G A T C A C T G A C T G A T G C C T A G A C T G A G T C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:SAGCGCTGCCGGSGGC
---CACAGCAGGGGG-
 A T G C T G C A A C T G G A T C A C T G A G T C G A C T A C T G A G T C G A T C A C T G A C T G A T G C C T A G A C T G A G T C
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:SAGCGCTGCCGGSGGC
CCACACAGCAGGAGA-
 A T G C T G C A A C T G G A T C A C T G A G T C G A C T A C T G A G T C G A T C A C T G A C T G A T G C C T A G A C T G A G T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:SAGCGCTGCCGGSGGC
-ANTGCCTGAGGCAAN
 A T G C T G C A A C T G G A T C A C T G A G T C G A C T A C T G A G T C G A T C A C T G A C T G A T G C C T A G A C T G A G T C
A C G T C G T A C A G T G A C T C A T G G A T C G A T C C A G T T A C G T G C A C A T G C A T G A G T C C G T A G T C A G A C T

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:SAGCGCTGCCGGSGGC
GAGCACAGCAGGACA-
 A T G C T G C A A C T G G A T C A C T G A G T C G A C T A C T G A G T C G A T C A C T G A C T G A T G C C T A G A C T G A G T C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:SAGCGCTGCCGGSGGC
--DCTCAGCAGG----
 A T G C T G C A A C T G G A T C A C T G A G T C G A C T A C T G A G T C G A T C A C T G A C T G A T G C C T A G A C T G A G T C
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T