Information for 9-AGCCGCTTSC (Motif 42)

T G C A T C A G T A G C G A T C T C A G A G T C A G C T A G C T T A C G T A G C
Reverse Opposite:
A T C G A T G C C T G A C T G A C T A G A G T C C T A G A T C G A G T C A C G T
p-value:1e-6
log p-value:-1.444e+01
Information Content per bp:1.724
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.93%
Number of Background Sequences with motif402.3
Percentage of Background Sequences with motif0.82%
Average Position of motif in Targets53.5 +/- 28.2bp
Average Position of motif in Background51.9 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0171.1_Nkx2-1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGCCGCTTSC----
TAAGCCACTTGAAATT
 A C G T A C G T T G C A T C A G T A G C G A T C T C A G A G T C A G C T A G C T T A C G T A G C A C G T A C G T A C G T A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

Gabpa/MA0062.2/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGCCGCTTSC--
-NCCACTTCCGG
 T G C A T C A G T A G C G A T C T C A G A G T C A G C T A G C T T A C G T A G C A C G T A C G T
A C G T A C T G A G T C A G T C C T G A A G T C C A G T A C G T A G T C G T A C A C T G A T C G

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.66
Offset:4
Orientation:forward strand
Alignment:AGCCGCTTSC
----GCTTCC
 T G C A T C A G T A G C G A T C T C A G A G T C A G C T A G C T T A C G T A G C
A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

PH0113.1_Nkx2-4/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGCCGCTTSC----
TAAGCCACTTGAAATT
 A C G T A C G T T G C A T C A G T A G C G A T C T C A G A G T C A G C T A G C T T A C G T A G C A C G T A C G T A C G T A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

PH0114.1_Nkx2-5/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGCCGCTTSC----
TAAGCCACTTGAATTT
 A C G T A C G T T G C A T C A G T A G C G A T C T C A G A G T C A G C T A G C T T A C G T A G C A C G T A C G T A C G T A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

ELK4/MA0076.2/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AGCCGCTTSC---
--CCACTTCCGGC
 T G C A T C A G T A G C G A T C T C A G A G T C A G C T A G C T T A C G T A G C A C G T A C G T A C G T
A C G T A C G T A T G C A T G C C T G A A G T C C G A T A C G T A G T C A G T C A C T G A T C G A G T C

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AGCCGCTTSC-
-ACCACTTGAA
 T G C A T C A G T A G C G A T C T C A G A G T C A G C T A G C T T A C G T A G C A C G T
A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

PH0115.1_Nkx2-6/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGCCGCTTSC----
TAAGCCACTTAACATT
 A C G T A C G T T G C A T C A G T A G C G A T C T C A G A G T C A G C T A G C T T A C G T A G C A C G T A C G T A C G T A C G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGCCGCTTSC-
CAGCTGTTTCCT
 A C G T T G C A T C A G T A G C G A T C T C A G A G T C A G C T A G C T T A C G T A G C A C G T
G T A C C G T A C A T G T A G C A G C T A C T G A G C T G C A T A C G T A G T C A G T C A G C T

NKX2-8/MA0673.1/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGCCGCTTSC-
--CCACTTGAA
 T G C A T C A G T A G C G A T C T C A G A G T C A G C T A G C T T A C G T A G C A C G T
A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A