Information for 15-KARSACAAKTTTAAAT (Motif 22)

C A G T C T G A T C G A A T G C G T C A G T A C C G T A C G T A C A G T C G A T A C G T A G C T C G T A C G T A C T G A C A G T
Reverse Opposite:
G C T A A G C T A C G T A C G T C T G A C G T A C G T A G T C A C G A T A C G T C A T G C A G T T A C G A G C T G A C T G T C A
p-value:1e-9
log p-value:-2.270e+01
Information Content per bp:1.724
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif32.5
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets60.6 +/- 23.1bp
Average Position of motif in Background52.0 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.69
Offset:7
Orientation:reverse strand
Alignment:KARSACAAKTTTAAAT
-------NATTCAAAT
 C A G T C T G A T C G A A T G C G T C A G T A C C G T A C G T A C A G T C G A T A C G T A G C T C G T A C G T A C T G A C A G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.64
Offset:5
Orientation:forward strand
Alignment:KARSACAAKTTTAAAT
-----CGGTTTCAAA-
 C A G T C T G A T C G A A T G C G T C A G T A C C G T A C G T A C A G T C G A T A C G T A G C T C G T A C G T A C T G A C A G T
A C G T A C G T A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:3
Score:0.58
Offset:7
Orientation:forward strand
Alignment:KARSACAAKTTTAAAT--
-------ATATTAATTAA
 C A G T C T G A T C G A A T G C G T C A G T A C C G T A C G T A C A G T C G A T A C G T A G C T C G T A C G T A C T G A C A G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

Arid3a/MA0151.1/Jaspar

Match Rank:4
Score:0.58
Offset:9
Orientation:forward strand
Alignment:KARSACAAKTTTAAAT
---------ATTAAA-
 C A G T C T G A T C G A A T G C G T C A G T A C C G T A C G T A C A G T C G A T A C G T A G C T C G T A C G T A C T G A C A G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.57
Offset:7
Orientation:forward strand
Alignment:KARSACAAKTTTAAAT-
-------ACATCAAAGG
 C A G T C T G A T C G A A T G C G T C A G T A C C G T A C G T A C A G T C G A T A C G T A G C T C G T A C G T A C T G A C A G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

PH0114.1_Nkx2-5/Jaspar

Match Rank:6
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:KARSACAAKTTTAAAT------
------AAATTCAAGTGGNTTN
 C A G T C T G A T C G A A T G C G T C A G T A C C G T A C G T A C A G T C G A T A C G T A G C T C G T A C G T A C T G A C A G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

PH0115.1_Nkx2-6/Jaspar

Match Rank:7
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:KARSACAAKTTTAAAT------
------AATNTTAAGTGGNTNN
 C A G T C T G A T C G A A T G C G T C A G T A C C G T A C G T A C A G T C G A T A C G T A G C T C G T A C G T A C T G A C A G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

PB0165.1_Sox11_2/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--KARSACAAKTTTAAAT
NNCNNAACAATTNT----
 A C G T A C G T C A G T C T G A T C G A A T G C G T C A G T A C C G T A C G T A C A G T C G A T A C G T A G C T C G T A C G T A C T G A C A G T
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T A C G T A C G T A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:9
Score:0.56
Offset:5
Orientation:forward strand
Alignment:KARSACAAKTTTAAAT---
-----AAAGATCAAAGGAA
 C A G T C T G A T C G A A T G C G T C A G T A C C G T A C G T A C A G T C G A T A C G T A G C T C G T A C G T A C T G A C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

Tcf7/MA0769.1/Jaspar

Match Rank:10
Score:0.56
Offset:5
Orientation:forward strand
Alignment:KARSACAAKTTTAAAT-
-----AAAGATCAAAGG
 C A G T C T G A T C G A A T G C G T C A G T A C C G T A C G T A C A G T C G A T A C G T A G C T C G T A C G T A C T G A C A G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G