Information for 5-AAGCCTGAAGRCCAWG (Motif 6)

G C T A C G T A T C A G A T G C G A T C C G A T A C T G C T G A C T G A C T A G C T G A A G T C G A T C G T C A C G A T A C T G
Reverse Opposite:
T A G C G C T A A C G T C T A G C T A G G A C T A G T C G A C T A G C T G T A C C G T A C A T G A T C G A G T C A C G T C G A T
p-value:1e-11
log p-value:-2.656e+01
Information Content per bp:1.686
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.70%
Number of Background Sequences with motif50.6
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets56.8 +/- 19.9bp
Average Position of motif in Background51.9 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AAGCCTGAAGRCCAWG
AAGCTTG---------
 G C T A C G T A T C A G A T G C G A T C C G A T A C T G C T G A C T G A C T A G C T G A A G T C G A T C G T C A C G A T A C T G
C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer

Match Rank:2
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AAGCCTGAAGRCCAWG---
VAAACYKGTHWAACMRGTTT
 A C G T G C T A C G T A T C A G A T G C G A T C C G A T A C T G C T G A C T G A C T A G C T G A A G T C G A T C G T C A C G A T A C T G A C G T A C G T A C G T
T C G A C T G A C T G A C G T A T A G C G A C T C A T G T C A G G C A T G C A T C G T A C T G A C T G A A G T C G T A C C T A G A T C G G A C T G A C T A G C T

Pax6/MA0069.1/Jaspar

Match Rank:3
Score:0.50
Offset:-5
Orientation:reverse strand
Alignment:-----AAGCCTGAAGRCCAWG
AANTCATGCGTGAA-------
 A C G T A C G T A C G T A C G T A C G T G C T A C G T A T C A G A T G C G A T C C G A T A C T G C T G A C T G A C T A G C T G A A G T C G A T C G T C A C G A T A C T G
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AAGCCTGAAGRCCAWG-----
-NNCCTGNAAAAAAAAAAAAA
 G C T A C G T A T C A G A T G C G A T C C G A T A C T G C T G A C T G A C T A G C T G A A G T C G A T C G T C A C G A T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:AAGCCTGAAGRCCAWG
--GCCTCAGGGCAT--
 G C T A C G T A T C A G A T G C G A T C C G A T A C T G C T G A C T G A C T A G C T G A A G T C G A T C G T C A C G A T A C T G
A C G T A C G T A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:AAGCCTGAAGRCCAWG-----
-NNCCTGNAAAAAAAAAAAAA
 G C T A C G T A T C A G A T G C G A T C C G A T A C T G C T G A C T G A C T A G C T G A A G T C G A T C G T C A C G A T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

ELF1/MA0473.2/Jaspar

Match Rank:7
Score:0.48
Offset:0
Orientation:forward strand
Alignment:AAGCCTGAAGRCCAWG
AACCCGGAAGTG----
 G C T A C G T A T C A G A T G C G A T C C G A T A C T G C T G A C T G A C T A G C T G A A G T C G A T C G T C A C G A T A C T G
C G T A G C T A G T A C T A G C G T A C A C T G A C T G C T G A G C T A C T A G G A C T T C A G A C G T A C G T A C G T A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:8
Score:0.48
Offset:2
Orientation:forward strand
Alignment:AAGCCTGAAGRCCAWG
--SCCTSAGGSCAW--
 G C T A C G T A T C A G A T G C G A T C C G A T A C T G C T G A C T G A C T A G C T G A A G T C G A T C G T C A C G A T A C T G
A C G T A C G T A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.47
Offset:7
Orientation:reverse strand
Alignment:AAGCCTGAAGRCCAWG-
-------AAAACAATGG
 G C T A C G T A T C A G A T G C G A T C C G A T A C T G C T G A C T G A C T A G C T G A A G T C G A T C G T C A C G A T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

POL002.1_INR/Jaspar

Match Rank:10
Score:0.47
Offset:0
Orientation:reverse strand
Alignment:AAGCCTGAAGRCCAWG
NNNANTGA--------
 G C T A C G T A T C A G A T G C G A T C C G A T A C T G C T G A C T G A C T A G C T G A A G T C G A T C G T C A C G A T A C T G
T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T