Information for 20-KTCAWAAAYYTKTWAA (Motif 41)

A C G T A C G T G A T C C G T A C G T A G T C A G T C A G T C A A G C T A G C T C G A T A C G T C A G T C G T A G T C A C G T A
Reverse Opposite:
A C G T A C G T C G A T G T C A G T C A C G T A C T G A C T G A A C G T C A G T A C G T C G A T C G A T C T A G C G T A G T C A
p-value:1e-7
log p-value:-1.633e+01
Information Content per bp:1.728
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif13.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets54.3 +/- 18.6bp
Average Position of motif in Background51.9 +/- 23.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0073.1_Hoxc9/Jaspar

Match Rank:1
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----KTCAWAAAYYTKTWAA
GGAGGTCATTAATTAT----
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A G T C A G T C A G T C A A G C T A G C T C G A T A C G T C A G T C G T A G T C A C G T A
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T A C G T A C G T A C G T A C G T

PH0065.1_Hoxc10/Jaspar

Match Rank:2
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----KTCAWAAAYYTKTWAA
TAAAGTCGTAAAACGT----
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A G T C A G T C A G T C A A G C T A G C T C G A T A C G T C A G T C G T A G T C A C G T A
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T A C G T A C G T A C G T A C G T

PB0197.1_Zfp105_2/Jaspar

Match Rank:3
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----KTCAWAAAYYTKTWAA
ATGGTTCAATAATTTTG---
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A G T C A G T C A G T C A A G C T A G C T C G A T A C G T C A G T C G T A G T C A C G T A
C T A G A G C T C A T G T A C G A C G T A G C T T G A C T G C A T G C A A G C T T C G A C G T A A G C T C A G T A G C T A C G T C T A G A C G T A C G T A C G T

PH0047.1_Hoxa11/Jaspar

Match Rank:4
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----KTCAWAAAYYTKTWAA
TAAAGTCGTAAAACAT----
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A G T C A G T C A G T C A A G C T A G C T C G A T A C G T C A G T C G T A G T C A C G T A
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T A C G T A C G T A C G T A C G T

PH0077.1_Hoxd12/Jaspar

Match Rank:5
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----KTCAWAAAYYTKTWAA
CAAGGTCGTAAAATCTT---
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A G T C A G T C A G T C A A G C T A G C T C G A T A C G T C A G T C G T A G T C A C G T A
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T A C G T A C G T A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:6
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----KTCAWAAAYYTKTWAA
TAAAGTCGTAAAATAG----
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A G T C A G T C A G T C A A G C T A G C T C G A T A C G T C A G T C G T A G T C A C G T A
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G A C G T A C G T A C G T A C G T

PH0076.1_Hoxd11/Jaspar

Match Rank:7
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----KTCAWAAAYYTKTWAA
TAAGGTCGTAAAATCCT---
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A G T C A G T C A G T C A A G C T A G C T C G A T A C G T C A G T C G T A G T C A C G T A
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T A C G T A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:KTCAWAAAYYTKTWAA
GTCGTAAAAT------
 A C G T A C G T G A T C C G T A C G T A G T C A G T C A G T C A A G C T A G C T C G A T A C G T C A G T C G T A G T C A C G T A
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-KTCAWAAAYYTKTWAA
GGTCGTAAAATT-----
 A C G T A C G T A C G T G A T C C G T A C G T A G T C A G T C A G T C A A G C T A G C T C G A T A C G T C A G T C G T A G T C A C G T A
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T A C G T A C G T A C G T A C G T A C G T

PH0067.1_Hoxc12/Jaspar

Match Rank:10
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----KTCAWAAAYYTKTWAA
TTAGGTCGTAAAATTTC---
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A G T C A G T C A G T C A A G C T A G C T C G A T A C G T C A G T C G T A G T C A C G T A
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C A C G T A C G T A C G T