Information for 12-ACTGTCTAATTHT (Motif 25)

C G T A A G T C C G A T A C T G A C G T A G T C A C G T C G T A C G T A C G A T A C G T G C T A A C G T
Reverse Opposite:
C G T A C A G T C G T A C G T A A C G T A C G T G T C A A C T G C G T A A G T C C G T A C T A G A C G T
p-value:1e-9
log p-value:-2.088e+01
Information Content per bp:1.870
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.3 +/- 24.5bp
Average Position of motif in Background45.3 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VSX2/MA0726.1/Jaspar

Match Rank:1
Score:0.64
Offset:5
Orientation:forward strand
Alignment:ACTGTCTAATTHT
-----CTAATTAG
 C G T A A G T C C G A T A C T G A C G T A G T C A C G T C G T A C G T A C G A T A C G T G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G

VSX1/MA0725.1/Jaspar

Match Rank:2
Score:0.64
Offset:5
Orientation:forward strand
Alignment:ACTGTCTAATTHT
-----CTAATTAT
 C G T A A G T C C G A T A C T G A C G T A G T C A C G T C G T A C G T A C G A T A C G T G C T A A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G A C T G T C A T C G A G A C T C A G T C T G A A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:3
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:ACTGTCTAATTHT
----NCTAATTA-
 C G T A A G T C C G A T A C T G A C G T A G T C A C G T C G T A C G T A C G A T A C G T G C T A A C G T
A C G T A C G T A C G T A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ACTGTCTAATTHT
-TWGTCTGV----
 C G T A A G T C C G A T A C T G A C G T A G T C A C G T C G T A C G T A C G A T A C G T G C T A A C G T
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T

VAX1/MA0722.1/Jaspar

Match Rank:5
Score:0.60
Offset:5
Orientation:forward strand
Alignment:ACTGTCTAATTHT
-----CTAATTAC
 C G T A A G T C C G A T A C T G A C G T A G T C A C G T C G T A C G T A C G A T A C G T G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G A C T G T C A G T C A C G A T C A G T C T G A G A T C

PAX4/MA0068.2/Jaspar

Match Rank:6
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:ACTGTCTAATTHT
-----CTAATTAG
 C G T A A G T C C G A T A C T G A C G T A G T C A C G T C G T A C G T A C G A T A C G T G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C A G T C G T A G T C A A C G T C G A T G T C A T C A G

LBX1/MA0618.1/Jaspar

Match Rank:7
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:ACTGTCTAATTHT
-----CTAATTAA
 C G T A A G T C C G A T A C T G A C G T A G T C A C G T C G T A C G T A C G A T A C G T G C T A A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A

Dlx1/MA0879.1/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:ACTGTCTAATTHT-
----NNTAATTANN
 C G T A A G T C C G A T A C T G A C G T A G T C A C G T C G T A C G T A C G A T A C G T G C T A A C G T A C G T
A C G T A C G T A C G T A C G T T A C G T G C A C G A T T G C A G C T A C G A T A C G T C T G A A C T G A C T G

PH0022.1_Dlx3/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:ACTGTCTAATTHT-----
-NNNGGTAATTATNGNGN
 C G T A A G T C C G A T A C T G A C G T A G T C A C G T C G T A C G T A C G A T A C G T G C T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G C G A T A T G C C A T G T C A G G A C T G C T A C G T A A C G T C G A T C T G A G A C T G T A C A C T G A G T C C A T G T G C A

PH0021.1_Dlx2/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ACTGTCTAATTHT---
CTGANNTAATTATNNN
 C G T A A G T C C G A T A C T G A C G T A G T C A C G T C G T A C G T A C G A T A C G T G C T A A C G T A C G T A C G T A C G T
T A G C G A C T C A T G C T G A C T A G T A C G G A C T C G T A C G T A C G A T A C G T C T G A G A C T G A C T A G T C A G T C