Information for 4-CAGACTGGTT (Motif 15)

A G T C C G T A C T A G C G T A A T G C G A C T C A T G C A T G G A C T A G C T
Reverse Opposite:
T C G A C T G A G T A C G T A C C T G A T A C G G C A T G A T C G C A T T C A G
p-value:1e-10
log p-value:-2.437e+01
Information Content per bp:1.652
Number of Target Sequences with motif83.0
Percentage of Target Sequences with motif10.86%
Number of Background Sequences with motif2401.9
Percentage of Background Sequences with motif4.92%
Average Position of motif in Targets51.0 +/- 26.6bp
Average Position of motif in Background49.7 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GRHL1/MA0647.1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CAGACTGGTT--
NAAACCGGTTTT
 A G T C C G T A C T A G C G T A A T G C G A C T C A T G C A T G G A C T A G C T A C G T A C G T
G C T A C G T A C T G A C G T A A T G C G A T C C A T G A C T G G C A T G A C T G C A T C A G T

TFCP2/MA0145.3/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CAGACTGGTT-
-AAACCGGTTT
 A G T C C G T A C T A G C G T A A T G C G A C T C A T G C A T G G A C T A G C T A C G T
A C G T T C G A C G T A C G T A T A G C G A T C C T A G A T C G G C A T G A C T G A C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTGGTT
CCAGACAG---
 A C G T A G T C C G T A C T A G C G T A A T G C G A C T C A T G C A T G G A C T A G C T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTGGTT
CCAGACRSVB-
 A C G T A G T C C G T A C T A G C G T A A T G C G A C T C A T G C A T G G A C T A G C T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTGGTT
BCAGACWA---
 A C G T A G T C C G T A C T A G C G T A A T G C G A C T C A T G C A T G G A C T A G C T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CAGACTGGTT------
GAAAACTAGTTAACATC
 A C G T A G T C C G T A C T A G C G T A A T G C G A C T C A T G C A T G G A C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

NFYB/MA0502.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAGACTGGTT-----
CTGATTGGTCNATTT
 A G T C C G T A C T A G C G T A A T G C G A C T C A T G C A T G G A C T A G C T A C G T A C G T A C G T A C G T A C G T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

NFYA/MA0060.2/Jaspar

Match Rank:8
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------CAGACTGGTT--
AGAGTGCTGATTGGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T A G C G T A A T G C G A C T C A T G C A T G G A C T A G C T A C G T A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CAGACTGGTT---
-TGATTGGCTANN
 A G T C C G T A C T A G C G T A A T G C G A C T C A T G C A T G G A C T A G C T A C G T A C G T A C G T
A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

HMBOX1/MA0895.1/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CAGACTGGTT---
---ACTAGTTAAC
 A G T C C G T A C T A G C G T A A T G C G A C T C A T G C A T G G A C T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C