Information for 4-CTCCCAGATTGATGKA (Motif 4)

G A T C C G A T A G T C G T A C G T A C C G T A C T A G C G T A A C G T A G C T A T C G C G T A A C G T C A T G A C T G C T G A
Reverse Opposite:
A G C T G T A C G T A C G T C A A C G T A T G C C T G A T G C A C G A T G A T C C G A T C A T G A C T G A C T G C G T A C T A G
p-value:1e-14
log p-value:-3.257e+01
Information Content per bp:1.705
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.94%
Number of Background Sequences with motif29.6
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets43.5 +/- 24.4bp
Average Position of motif in Background47.7 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CTCCCAGATTGATGKA
-----TGATTGATGA-
 G A T C C G A T A G T C G T A C G T A C C G T A C T A G C G T A A C G T A G C T A T C G C G T A A C G T C A T G A C T G C T G A
A C G T A C G T A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTCCCAGATTGATGKA---
--NNNNNATTGATGNGTGN
 G A T C C G A T A G T C G T A C G T A C C G T A C T A G C G T A A C G T A G C T A T C G C G T A A C G T C A T G A C T G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Hoxa9/MA0594.1/Jaspar

Match Rank:3
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CTCCCAGATTGATGKA
-----TGATTTATGGC
 G A T C C G A T A G T C G T A C G T A C C G T A C T A G C G T A A C G T A G C T A T C G C G T A A C G T C A T G A C T G C T G A
A C G T A C G T A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CTCCCAGATTGATGKA-
-----TGATTTATGGCC
 G A T C C G A T A G T C G T A C G T A C C G T A C T A G C G T A A C G T A G C T A T C G C G T A A C G T C A T G A C T G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

PBX1/MA0070.1/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CTCCCAGATTGATGKA
---TTTGATTGATGN-
 G A T C C G A T A G T C G T A C G T A C C G T A C T A G C G T A A C G T A G C T A T C G C G T A A C G T C A T G A C T G C T G A
A C G T A C G T A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:6
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CTCCCAGATTGATGKA
----ATGATKGATGRC
 G A T C C G A T A G T C G T A C G T A C C G T A C T A G C G T A A C G T A G C T A T C G C G T A A C G T C A T G A C T G C T G A
A C G T A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CTCCCAGATTGATGKA-
-----TGATTRATGGCY
 G A T C C G A T A G T C G T A C G T A C C G T A C T A G C G T A A C G T A G C T A T C G C G T A A C G T C A T G A C T G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:8
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CTCCCAGATTGATGKA-
-----TGATTTATGGCC
 G A T C C G A T A G T C G T A C G T A C C G T A C T A G C G T A A C G T A G C T A T C G C G T A A C G T C A T G A C T G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxc9/MA0485.1/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CTCCCAGATTGATGKA-
----NTGATTTATGGCC
 G A T C C G A T A G T C G T A C G T A C C G T A C T A G C G T A A C G T A G C T A T C G C G T A A C G T C A T G A C T G C T G A A C G T
A C G T A C G T A C G T A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PB0144.1_Lef1_2/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CTCCCAGATTGATGKA-
-NNANTGATTGATNTTN
 G A T C C G A T A G T C G T A C G T A C C G T A C T A G C G T A A C G T A G C T A T C G C G T A A C G T C A T G A C T G C T G A A C G T
A C G T G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C