Information for 6-TCGCTTGCCT (Motif 18)

A C G T A T G C C T A G A G T C A G C T A C G T C T A G A T G C A G T C A C G T
Reverse Opposite:
C G T A A C T G A T C G A G T C T G C A C T G A A C T G G A T C A T C G C G T A
p-value:1e-9
log p-value:-2.090e+01
Information Content per bp:1.858
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.21%
Number of Background Sequences with motif165.5
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets54.4 +/- 23.3bp
Average Position of motif in Background52.1 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TCGCTTGCCT-
NNACTTGCCTT
 A C G T A T G C C T A G A G T C A G C T A C G T C T A G A T G C A G T C A C G T A C G T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

PB0147.1_Max_2/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TCGCTTGCCT-
NNGTCGCGTGNCAC
 A C G T A C G T A C G T A C G T A T G C C T A G A G T C A G C T A C G T C T A G A T G C A G T C A C G T A C G T
G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TCGCTTGCCT-
NNACTTACCTN
 A C G T A T G C C T A G A G T C A G C T A C G T C T A G A T G C A G T C A C G T A C G T
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G

IRF2/MA0051.1/Jaspar

Match Rank:4
Score:0.59
Offset:-9
Orientation:reverse strand
Alignment:---------TCGCTTGCCT
GTTTTGCTTTCACTTTCC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C T A G A G T C A G C T A C G T C T A G A T G C A G T C A C G T
C A T G C G A T C G A T G C A T A G C T T C A G A T C G A C G T A C G T A C G T A G T C C T A G A G T C A C G T C G A T A C G T A G T C T A G C A C G T

IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer

Match Rank:5
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TCGCTTGCCT
ASTTTCASTTYC--
 A C G T A C G T A C G T A C G T A C G T A T G C C T A G A G T C A G C T A C G T C T A G A T G C A G T C A C G T
C T G A A T G C G C A T G A C T A G C T A G T C C T G A A T G C G C A T C G A T A G T C A G T C A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TCGCTTGCCT
NNCGCGTGNN-
 A C G T A C G T A T G C C T A G A G T C A G C T A C G T C T A G A T G C A G T C A C G T
C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C A C G T

USF2/MA0526.1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TCGCTTGCCT
GGTCACATGAC-
 A C G T A C G T A C G T A T G C C T A G A G T C A G C T A C G T C T A G A T G C A G T C A C G T
C T A G T C A G A G C T A G T C C G T A A G T C T C G A A C G T A C T G T C G A A G T C A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TCGCTTGCCT--
GTCATGCHTGRCTGS
 A C G T A C G T A C G T A C G T A T G C C T A G A G T C A G C T A C G T C T A G A T G C A G T C A C G T A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

IRF7/MA0772.1/Jaspar

Match Rank:9
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----TCGCTTGCCT
ANTTTCGCTTTCGN
 A C G T A C G T A C G T A C G T A C G T A T G C C T A G A G T C A G C T A C G T C T A G A T G C A G T C A C G T
C G T A A G T C C G A T A C G T C A G T G A T C C T A G A G T C A C G T C G A T A C G T T G A C A C T G C A G T

PB0008.1_E2F2_1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TCGCTTGCCT----
NTCGCGCGCCTTNNN
 A C G T A C G T A T G C C T A G A G T C A G C T A C G T C T A G A T G C A G T C A C G T A C G T A C G T A C G T A C G T
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T