Information for 5-TGCATGACTG (Motif 17)

A C G T C T A G G T A C G T C A C G A T A C T G T C G A A T G C C A G T A C T G
Reverse Opposite:
A G T C G T C A A T C G A G C T A G T C G C T A A C G T A C T G A G T C G T C A
p-value:1e-9
log p-value:-2.109e+01
Information Content per bp:1.842
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.86%
Number of Background Sequences with motif110.7
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets51.5 +/- 26.4bp
Average Position of motif in Background47.9 +/- 41.1bp
Strand Bias (log2 ratio + to - strand density)2.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----TGCATGACTG-
GTCATGCHTGRCTGS
 A C G T A C G T A C G T A C G T A C G T C T A G G T A C G T C A C G A T A C T G T C G A A T G C C A G T A C T G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:2
Score:0.74
Offset:2
Orientation:forward strand
Alignment:TGCATGACTG
--CATGAC--
 A C G T C T A G G T A C G T C A C G A T A C T G T C G A A T G C C A G T A C T G
A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:3
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:TGCATGACTG
-NCGTGACN-
 A C G T C T A G G T A C G T C A C G A T A C T G T C G A A T G C C A G T A C T G
A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGCATGACTG--
TGAGTGACAGSC
 A C G T C T A G G T A C G T C A C G A T A C T G T C G A A T G C C A G T A C T G A C G T A C G T
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

PB0028.1_Hbp1_1/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TGCATGACTG--
ACTATGAATGAATGAT
 A C G T A C G T A C G T A C G T A C G T C T A G G T A C G T C A C G A T A C T G T C G A A T G C C A G T A C T G A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PB0170.1_Sox17_2/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGCATGACTG-----
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T C T A G G T A C G T C A C G A T A C T G T C G A A T G C C A G T A C T G A C G T A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGCATGACTG-
NTGATTGACAGN
 A C G T A C G T C T A G G T A C G T C A C G A T A C T G T C G A A T G C C A G T A C T G A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

PB0178.1_Sox8_2/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGCATGACTG-
NNTNTCATGAATGT
 A C G T A C G T A C G T A C G T C T A G G T A C G T C A C G A T A C T G T C G A A T G C C A G T A C T G A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TGCATGACTG-
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G G T A C G T C A C G A T A C T G T C G A A T G C C A G T A C T G A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGCATGACTG-
BTGABTGACAGS
 A C G T A C G T C T A G G T A C G T C A C G A T A C T G T C G A A T G C C A G T A C T G A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C