Information for 7-CGCACAGTCTAAT (Motif 7)

A T G C A T C G G A T C G T C A T A G C C G T A A C T G A C G T A G T C A C G T C G T A G T C A A C G T
Reverse Opposite:
G T C A A C G T A C G T C G T A A C T G G T C A A G T C A C G T A C T G A C G T C A T G A T G C A T C G
p-value:1e-11
log p-value:-2.543e+01
Information Content per bp:1.821
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.8 +/- 22.6bp
Average Position of motif in Background36.1 +/- 6.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CGCACAGTCTAAT--
GGCAAAAGTCCAATAA
 A C G T A T G C A T C G G A T C G T C A T A G C C G T A A C T G A C G T A G T C A C G T C G T A G T C A A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CGCACAGTCTAAT
----TWGTCTGV-
 A T G C A T C G G A T C G T C A T A G C C G T A A C T G A C G T A G T C A C G T C G T A G T C A A C G T
A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

BARX1/MA0875.1/Jaspar

Match Rank:3
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:CGCACAGTCTAAT---
--------NTAATTGN
 A T G C A T C G G A T C G T C A T A G C C G T A A C T G A C G T A G T C A C G T C G T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

HOXB3/MA0903.1/Jaspar

Match Rank:4
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:CGCACAGTCTAAT----
-------NNTAATTANN
 A T G C A T C G G A T C G T C A T A G C C G T A A C T G A C G T A G T C A C G T C G T A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G A T C T G A C T G A A G C T A C G T C T G A A T C G G A C T

PDX1/MA0132.2/Jaspar

Match Rank:5
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:CGCACAGTCTAAT---
--------CTAATTAN
 A T G C A T C G G A T C G T C A T A G C C G T A A C T G A C G T A G T C A C G T C G T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T G A A T G C

VENTX/MA0724.1/Jaspar

Match Rank:6
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:CGCACAGTCTAAT----
--------CTAATCGNT
 A T G C A T C G G A T C G T C A T A G C C G T A A C T G A C G T A G T C A C G T C G T A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T

EVX2/MA0888.1/Jaspar

Match Rank:7
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:CGCACAGTCTAAT----
-------NNTAATTANN
 A T G C A T C G G A T C G T C A T A G C C G T A A C T G A C G T A G T C A C G T C G T A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T G C G A C T T C G A T G C A A G C T A C G T C T G A A T G C A T G C

BSX/MA0876.1/Jaspar

Match Rank:8
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:CGCACAGTCTAAT---
--------NTAATTGG
 A T G C A T C G G A T C G T C A T A G C C G T A A C T G A C G T A G T C A C G T C G T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G

GSX2/MA0893.1/Jaspar

Match Rank:9
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:CGCACAGTCTAAT----
-------NTTAATTAGN
 A T G C A T C G G A T C G T C A T A G C C G T A A C T G A C G T A G T C A C G T C G T A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A G C T C G A T C G T A C G T A G C A T C A G T C T G A T A C G C A G T

HOXB2/MA0902.1/Jaspar

Match Rank:10
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:CGCACAGTCTAAT----
-------NNTAATTANN
 A T G C A T C G G A T C G T C A T A G C C G T A A C T G A C G T A G T C A C G T C G T A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T C G A T C T G A C G T A A G C T A C G T C T G A A T G C A G C T