Information for 4-GATTAACACA (Motif 6)

A C T G C T G A A G C T A C G T C T G A C T G A A G T C C G T A A G T C C G T A
Reverse Opposite:
A C G T C T A G C G A T A C T G A G C T A G C T G T C A C T G A A G C T A G T C
p-value:1e-11
log p-value:-2.737e+01
Information Content per bp:1.860
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.8 +/- 29.0bp
Average Position of motif in Background40.1 +/- 17.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GATTAACACA-
-ATTAACACCT
 A C T G C T G A A G C T A C G T C T G A C T G A A G T C C G T A A G T C C G T A A C G T
A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T

PH0123.1_Obox3/Jaspar

Match Rank:2
Score:0.70
Offset:-7
Orientation:forward strand
Alignment:-------GATTAACACA
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T G A A G C T A C G T C T G A C T G A A G T C C G T A A G T C C G T A
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

PH0137.1_Pitx1/Jaspar

Match Rank:3
Score:0.69
Offset:-7
Orientation:forward strand
Alignment:-------GATTAACACA
TTAGAGGGATTAACAAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T G A A G C T A C G T C T G A C T G A A G T C C G T A A G T C C G T A
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GATTAACACA
GGATTAGC---
 A C G T A C T G C T G A A G C T A C G T C T G A C T G A A G T C C G T A A G T C C G T A
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GATTAACACA
NGGATTAA----
 A C G T A C G T A C T G C T G A A G C T A C G T C T G A C T G A A G T C C G T A A G T C C G T A
T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GATTAACACA
VRGGATTARN---
 A C G T A C G T A C G T A C T G C T G A A G C T A C G T C T G A C T G A A G T C C G T A A G T C C G T A
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:7
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GATTAACACA
CGGATTAN----
 A C G T A C G T A C T G C T G A A G C T A C G T C T G A C T G A A G T C C G T A A G T C C G T A
T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:8
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GATTAACACA--
--TTMACACCTT
 A C T G C T G A A G C T A C G T C T G A C T G A A G T C C G T A A G T C C G T A A C G T A C G T
A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:9
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GATTAACACA
RGGATTAR----
 A C G T A C G T A C T G C T G A A G C T A C G T C T G A C T G A A G T C C G T A A G T C C G T A
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GATTAACACA
GGGATTAA----
 A C G T A C G T A C T G C T G A A G C T A C G T C T G A C T G A A G T C C G T A A G T C C G T A
C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T A C G T