Information for 10-AGAGTTCAGCNGC (Motif 17)

G T C A A C T G C G T A A C T G A C G T A C G T A T G C G T C A A C T G A G T C A G T C A C T G A G T C
Reverse Opposite:
A C T G A G T C T A C G A C T G A G T C A C G T A T C G C G T A T C G A A G T C A C G T A G T C C A G T
p-value:1e-8
log p-value:-2.072e+01
Information Content per bp:1.835
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets66.0 +/- 8.9bp
Average Position of motif in Background32.5 +/- 9.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR2F1/MA0017.2/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGAGTTCAGCNGC
CAAAGGTCAAGGG-
 A C G T G T C A A C T G C G T A A C T G A C G T A C G T A T G C G T C A A C T G A G T C A G T C A C T G A G T C
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGAGTTCAGCNGC
AGRGGTCA-----
 G T C A A C T G C G T A A C T G A C G T A C G T A T G C G T C A A C T G A G T C A G T C A C T G A G T C
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGAGTTCAGCNGC
TRAGGTCA-----
 G T C A A C T G C G T A A C T G A C G T A C G T A T G C G T C A A C T G A G T C A G T C A C T G A G T C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGAGTTCAGCNGC
CAAAGGTCAG----
 A C G T G T C A A C T G C G T A A C T G A C G T A C G T A T G C G T C A A C T G A G T C A G T C A C T G A G T C
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:AGAGTTCAGCNGC-
------CAGCTGNT
 G T C A A C T G C G T A A C T G A C G T A C G T A T G C G T C A A C T G A G T C A G T C A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T

PB0053.1_Rara_1/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AGAGTTCAGCNGC
TCTCAAAGGTCACCTG-
 A C G T A C G T A C G T A C G T G T C A A C T G C G T A A C T G A C G T A C G T A T G C G T C A A C T G A G T C A G T C A C T G A G T C
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:7
Score:0.58
Offset:4
Orientation:forward strand
Alignment:AGAGTTCAGCNGC---
----AGCAGCTGCTNN
 G T C A A C T G C G T A A C T G A C G T A C G T A T G C G T C A A C T G A G T C A G T C A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AGAGTTCAGCNGC--
-----NCAGCTGCTG
 G T C A A C T G C G T A A C T G A C G T A C G T A T G C G T C A A C T G A G T C A G T C A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

NHLH1/MA0048.2/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:AGAGTTCAGCNGC-
----CGCAGCTGCG
 G T C A A C T G C G T A A C T G A C G T A C G T A T G C G T C A A C T G A G T C A G T C A C T G A G T C A C G T
A C G T A C G T A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G

PB0118.1_Esrra_2/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AGAGTTCAGCNGC
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T G T C A A C T G C G T A A C T G A C G T A C G T A T G C G T C A A C T G A G T C A G T C A C T G A G T C
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C