Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-51 | -1.192e+02 | 0.0000 | 85.0 | 9.67% | 491.4 | 1.05% | motif file (matrix) |
svg |
2 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-38 | -8.852e+01 | 0.0000 | 104.0 | 11.83% | 1142.8 | 2.45% | motif file (matrix) |
svg |
3 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-29 | -6.808e+01 | 0.0000 | 139.0 | 15.81% | 2468.9 | 5.29% | motif file (matrix) |
svg |
4 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-27 | -6.412e+01 | 0.0000 | 172.0 | 19.57% | 3658.7 | 7.84% | motif file (matrix) |
svg |
5 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-27 | -6.385e+01 | 0.0000 | 115.0 | 13.08% | 1854.1 | 3.97% | motif file (matrix) |
svg |
6 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-26 | -6.170e+01 | 0.0000 | 186.0 | 21.16% | 4233.9 | 9.07% | motif file (matrix) |
svg |
7 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-24 | -5.631e+01 | 0.0000 | 104.0 | 11.83% | 1706.8 | 3.66% | motif file (matrix) |
svg |
8 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-17 | -4.013e+01 | 0.0000 | 128.0 | 14.56% | 2963.1 | 6.35% | motif file (matrix) |
svg |
9 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-16 | -3.839e+01 | 0.0000 | 86.0 | 9.78% | 1615.2 | 3.46% | motif file (matrix) |
svg |
10 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-16 | -3.690e+01 | 0.0000 | 79.0 | 8.99% | 1440.3 | 3.08% | motif file (matrix) |
svg |
11 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-15 | -3.655e+01 | 0.0000 | 95.0 | 10.81% | 1958.5 | 4.19% | motif file (matrix) |
svg |
12 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-12 | -2.854e+01 | 0.0000 | 46.0 | 5.23% | 685.2 | 1.47% | motif file (matrix) |
svg |
13 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-7 | -1.634e+01 | 0.0000 | 290.0 | 32.99% | 11695.3 | 25.05% | motif file (matrix) |
svg |
14 |
| MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-7 | -1.631e+01 | 0.0000 | 70.0 | 7.96% | 1875.6 | 4.02% | motif file (matrix) |
svg |
15 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-6 | -1.501e+01 | 0.0000 | 247.0 | 28.10% | 9782.1 | 20.95% | motif file (matrix) |
svg |
16 |
| ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer | 1e-5 | -1.242e+01 | 0.0001 | 5.0 | 0.57% | 12.4 | 0.03% | motif file (matrix) |
svg |
17 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.161e+01 | 0.0002 | 42.0 | 4.78% | 1063.2 | 2.28% | motif file (matrix) |
svg |
18 |
| Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer | 1e-4 | -1.069e+01 | 0.0005 | 6.0 | 0.68% | 30.0 | 0.06% | motif file (matrix) |
svg |
19 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-4 | -1.067e+01 | 0.0005 | 21.0 | 2.39% | 387.4 | 0.83% | motif file (matrix) |
svg |
20 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-4 | -9.695e+00 | 0.0011 | 129.0 | 14.68% | 4884.2 | 10.46% | motif file (matrix) |
svg |
21 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-3 | -8.955e+00 | 0.0022 | 19.0 | 2.16% | 374.8 | 0.80% | motif file (matrix) |
svg |
22 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-3 | -8.924e+00 | 0.0022 | 190.0 | 21.62% | 7850.8 | 16.81% | motif file (matrix) |
svg |
23 |
| p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer | 1e-3 | -7.843e+00 | 0.0062 | 30.0 | 3.41% | 801.0 | 1.72% | motif file (matrix) |
svg |
24 |
| E-box(bHLH)/Promoter/Homer | 1e-2 | -6.906e+00 | 0.0152 | 13.0 | 1.48% | 246.1 | 0.53% | motif file (matrix) |
svg |
25 |
| Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-2 | -6.599e+00 | 0.0198 | 109.0 | 12.40% | 4338.0 | 9.29% | motif file (matrix) |
svg |
26 |
| Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer | 1e-2 | -6.493e+00 | 0.0212 | 6.0 | 0.68% | 64.5 | 0.14% | motif file (matrix) |
svg |
27 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-2 | -6.213e+00 | 0.0270 | 78.0 | 8.87% | 2959.6 | 6.34% | motif file (matrix) |
svg |
28 |
| Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer | 1e-2 | -6.201e+00 | 0.0270 | 42.0 | 4.78% | 1381.0 | 2.96% | motif file (matrix) |
svg |
29 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-2 | -6.062e+00 | 0.0293 | 24.0 | 2.73% | 665.1 | 1.42% | motif file (matrix) |
svg |
30 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-2 | -5.981e+00 | 0.0307 | 14.0 | 1.59% | 308.0 | 0.66% | motif file (matrix) |
svg |
31 |
| NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer | 1e-2 | -5.871e+00 | 0.0331 | 116.0 | 13.20% | 4770.6 | 10.22% | motif file (matrix) |
svg |
32 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-2 | -5.459e+00 | 0.0484 | 14.0 | 1.59% | 326.9 | 0.70% | motif file (matrix) |
svg |
33 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-2 | -5.297e+00 | 0.0552 | 44.0 | 5.01% | 1542.6 | 3.30% | motif file (matrix) |
svg |
34 |
| ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer | 1e-2 | -5.273e+00 | 0.0552 | 238.0 | 27.08% | 10881.4 | 23.31% | motif file (matrix) |
svg |
35 |
| AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer | 1e-2 | -5.162e+00 | 0.0596 | 233.0 | 26.51% | 10654.1 | 22.82% | motif file (matrix) |
svg |
36 |
| AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.154e+00 | 0.0596 | 120.0 | 13.65% | 5074.6 | 10.87% | motif file (matrix) |
svg |
37 |
| AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer | 1e-2 | -5.020e+00 | 0.0650 | 149.0 | 16.95% | 6505.1 | 13.93% | motif file (matrix) |
svg |
38 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-2 | -4.879e+00 | 0.0729 | 37.0 | 4.21% | 1277.9 | 2.74% | motif file (matrix) |
svg |
39 |
| Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer | 1e-2 | -4.786e+00 | 0.0779 | 28.0 | 3.19% | 904.0 | 1.94% | motif file (matrix) |
svg |
40 |
| YY1(Zf)/Promoter/Homer | 1e-2 | -4.719e+00 | 0.0812 | 11.0 | 1.25% | 250.4 | 0.54% | motif file (matrix) |
svg |
41 |
| HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-2 | -4.684e+00 | 0.0820 | 84.0 | 9.56% | 3434.9 | 7.36% | motif file (matrix) |
svg |