Information for 4-CTAATTVAHT (Motif 9)

A T G C C G A T C T G A C G T A A C G T A C G T T A G C C G T A G C T A A C G T
Reverse Opposite:
C G T A C A G T A C G T A C T G C G T A C G T A A C G T A G C T C G T A A T C G
p-value:1e-10
log p-value:-2.517e+01
Information Content per bp:1.812
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.1 +/- 37.3bp
Average Position of motif in Background49.3 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0147.1_Pou3f2/Jaspar

Match Rank:1
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----CTAATTVAHT---
NNNACTAATTAATTANC
 A C G T A C G T A C G T A C G T A T G C C G A T C T G A C G T A A C G T A C G T T A G C C G T A G C T A A C G T A C G T A C G T A C G T
G A T C C T G A G T C A T G C A G A T C C A G T G T C A C G T A C G A T C A G T C T G A C T G A C A G T G C A T G C T A G C A T A T G C

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:2
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:CTAATTVAHT-
-TAATTGATTA
 A T G C C G A T C T G A C G T A A C G T A C G T T A G C C G T A G C T A A C G T A C G T
A C G T C G A T T C G A C G T A A G C T A C G T C T A G C T G A A C G T A G C T G C T A

mix-a/MA0621.1/Jaspar

Match Rank:3
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTVAHT
NCTAATTAANN
 A C G T A T G C C G A T C T G A C G T A A C G T A C G T T A G C C G T A G C T A A C G T
G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CTAATTVAHT
YTAATTAVHT
 A T G C C G A T C T G A C G T A A C G T A C G T T A G C C G T A G C T A A C G T
A G T C G A C T T C G A C G T A A C G T A C G T C T G A T C G A G C A T G C A T

PB0068.1_Sox1_1/Jaspar

Match Rank:5
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--CTAATTVAHT----
AATCAATTCAATAATT
 A C G T A C G T A T G C C G A T C T G A C G T A A C G T A C G T T A G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PH0154.1_Prrx1/Jaspar

Match Rank:6
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----CTAATTVAHT---
GTAACTAATTAACTACT
 A C G T A C G T A C G T A C G T A T G C C G A T C T G A C G T A A C G T A C G T T A G C C G T A G C T A A C G T A C G T A C G T A C G T
T A C G A C G T G T C A T C G A A G T C G A C T T C G A C T G A A G C T A G C T C T G A T C G A A G T C C A G T C T G A T A G C A G C T

Lhx3/MA0135.1/Jaspar

Match Rank:7
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CTAATTVAHT----
-AAATTAATTAATC
 A T G C C G A T C T G A C G T A A C G T A C G T T A G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C

LHX2/MA0700.1/Jaspar

Match Rank:8
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CTAATTVAHT
ACTAATTAAC-
 A C G T A T G C C G A T C T G A C G T A A C G T A C G T T A G C C G T A G C T A A C G T
T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C A C G T

PH0001.1_Alx3/Jaspar

Match Rank:9
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----CTAATTVAHT---
TAAACTAATTAGCTGAG
 A C G T A C G T A C G T A C G T A T G C C G A T C T G A C G T A A C G T A C G T T A G C C G T A G C T A A C G T A C G T A C G T A C G T
C G A T T C G A G C T A T C G A G A T C A G C T G T C A C T G A A G C T A C G T C T G A C T A G G A T C A G C T T A C G G C T A T C A G

LBX1/MA0618.1/Jaspar

Match Rank:10
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CTAATTVAHT
CTAATTAA--
 A T G C C G A T C T G A C G T A A C G T A C G T T A G C C G T A G C T A A C G T
T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T A C G T