Information for 13-CTGCCTGRCTTKG (Motif 18)

A G T C A C G T A C T G A G T C A G T C A C G T A C T G C T A G A G T C A C G T A C G T A C T G A C T G
Reverse Opposite:
G T A C G T A C G T C A C G T A A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C T A G
p-value:1e-8
log p-value:-1.887e+01
Information Content per bp:1.916
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets55.8 +/- 25.3bp
Average Position of motif in Background62.9 +/- 16.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CTGCCTGRCTTKG
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A G T C A G T C A C G T A C T G C T A G A G T C A C G T A C G T A C T G A C T G
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CTGCCTGRCTTKG
GTCATGCHTGRCTGS-
 A C G T A C G T A C G T A G T C A C G T A C T G A G T C A G T C A C G T A C T G C T A G A G T C A C G T A C G T A C T G A C T G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTGCCTGRCTTKG
CTGTCTGG-----
 A G T C A C G T A C T G A G T C A G T C A C G T A C T G C T A G A G T C A C G T A C G T A C T G A C T G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTGCCTGRCTTKG
-GGTCTGGCAT--
 A G T C A C G T A C T G A G T C A G T C A C G T A C T G C T A G A G T C A C G T A C G T A C T G A C T G
A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CTGCCTGRCTTKG
CACTTCCTGT-----
 A C G T A C G T A G T C A C G T A C T G A G T C A G T C A C G T A C T G C T A G A G T C A C G T A C G T A C T G A C T G
A G T C T C G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G A G C T A C G T A C G T A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:6
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CTGCCTGRCTTKG
----TTGACTTTT
 A G T C A C G T A C T G A G T C A G T C A C G T A C T G C T A G A G T C A C G T A C G T A C T G A C T G
A C G T A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CTGCCTGRCTTKG
NNACTTGCCTT------
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A G T C A G T C A C G T A C T G C T A G A G T C A C G T A C G T A C T G A C T G
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CTGCCTGRCTTKG-----
---GCTGACCTTGAACTN
 A G T C A C G T A C T G A G T C A G T C A C G T A C T G C T A G A G T C A C G T A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CTGCCTGRCTTKG
TTGCGTGCVA---
 A G T C A C G T A C T G A G T C A G T C A C G T A C T G C T A G A G T C A C G T A C G T A C T G A C T G
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CTGCCTGRCTTKG
-TGCGTG------
 A G T C A C G T A C T G A G T C A G T C A C G T A C T G C T A G A G T C A C G T A C G T A C T G A C T G
A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T