Information for 4-TAATYTRATT (Motif 3)

G C A T C G T A C G T A C A G T A G T C G C A T T C G A C G T A A G C T A C G T
Reverse Opposite:
T G C A C T G A G C A T A G C T C G T A T C A G G T C A C G A T G C A T C G T A
p-value:1e-32
log p-value:-7.510e+01
Information Content per bp:1.636
Number of Target Sequences with motif154.0
Percentage of Target Sequences with motif18.83%
Number of Background Sequences with motif2865.3
Percentage of Background Sequences with motif6.37%
Average Position of motif in Targets53.9 +/- 25.2bp
Average Position of motif in Background50.9 +/- 35.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:TAATYTRATT--
TAATYNRATTAR
 G C A T C G T A C G T A C A G T A G T C G C A T T C G A C G T A A G C T A C G T A C G T A C G T
G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:2
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:TAATYTRATT--
TAATTNVATTAN
 G C A T C G T A C G T A C A G T A G T C G C A T T C G A C G T A A G C T A C G T A C G T A C G T
G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G

PHOX2A/MA0713.1/Jaspar

Match Rank:3
Score:0.88
Offset:0
Orientation:forward strand
Alignment:TAATYTRATT-
TAATTTAATTA
 G C A T C G T A C G T A C A G T A G T C G C A T T C G A C G T A A G C T A C G T A C G T
G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

Phox2b/MA0681.1/Jaspar

Match Rank:4
Score:0.88
Offset:0
Orientation:forward strand
Alignment:TAATYTRATT-
TAATTTAATTA
 G C A T C G T A C G T A C A G T A G T C G C A T T C G A C G T A A G C T A C G T A C G T
G C A T C T G A T C G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

PROP1/MA0715.1/Jaspar

Match Rank:5
Score:0.87
Offset:0
Orientation:forward strand
Alignment:TAATYTRATT-
TAATTTAATTA
 G C A T C G T A C G T A C A G T A G T C G C A T T C G A C G T A A G C T A C G T A C G T
G C A T C G T A C T G A G C A T G A C T C G A T G T C A C T G A C G A T G A C T C G T A

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:6
Score:0.86
Offset:0
Orientation:forward strand
Alignment:TAATYTRATT--
TAATCHGATTAC
 G C A T C G T A C G T A C A G T A G T C G C A T T C G A C G T A A G C T A C G T A C G T A C G T
G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C

DUX4/MA0468.1/Jaspar

Match Rank:7
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TAATYTRATT-
TAATTTAATCA
 G C A T C G T A C G T A C A G T A G T C G C A T T C G A C G T A A G C T A C G T A C G T
G C A T C T G A C G T A G A C T A G C T A G C T G T C A C G T A A C G T A G T C C G T A

DUXA/MA0884.1/Jaspar

Match Rank:8
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TAATYTRATT--
CTAATTTAATCAA
 A C G T G C A T C G T A C G T A C A G T A G T C G C A T T C G A C G T A A G C T A C G T A C G T A C G T
G A T C G A C T C T G A T C G A G A C T A G C T A G C T T G C A C T G A A C G T A G T C C G T A C T G A

DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer

Match Rank:9
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TAATYTRATT---
NWTAAYCYAATCAWN
 A C G T A C G T G C A T C G T A C G T A C A G T A G T C G C A T T C G A C G T A A G C T A C G T A C G T A C G T A C G T
C A T G G C A T C G A T C G T A C G T A G A T C A G T C A G C T C G T A C G T A A C G T A G T C C G T A C G T A G C A T

PB0169.1_Sox15_2/Jaspar

Match Rank:10
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TAATYTRATT---
TTGAATGAAATTCGA
 A C G T A C G T G C A T C G T A C G T A C A G T A G T C G C A T T C G A C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A