Information for 1-GCCATGTTAG (Motif 4)

A C T G A G T C A G T C C T G A A G C T A C T G A C G T A C G T G C T A A T C G
Reverse Opposite:
A T G C C G A T C G T A C G T A T G A C C T G A G A C T A C T G A C T G A G T C
p-value:1e-11
log p-value:-2.722e+01
Information Content per bp:1.857
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif36.8
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets56.5 +/- 22.9bp
Average Position of motif in Background52.3 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---GCCATGTTAG
GCNGCCATCTTG-
 A C G T A C G T A C G T A C T G A G T C A G T C C T G A A G C T A C T G A C G T A C G T G C T A A T C G
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GCCATGTTAG
GCCGCCATCTTG-
 A C G T A C G T A C G T A C T G A G T C A G T C C T G A A G C T A C T G A C G T A C G T G C T A A T C G
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCCATGTTAG
GTCCGCCATTA---
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C T G A A G C T A C T G A C G T A C G T G C T A A T C G
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCCATGTTAG-
TNCCATATATGG
 A C G T A C T G A G T C A G T C C T G A A G C T A C T G A C G T A C G T G C T A A T C G A C G T
C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G

CREB3L1/MA0839.1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCCATGTTAG--
ATGCCACGTCATCA
 A C G T A C G T A C T G A G T C A G T C C T G A A G C T A C T G A C G T A C G T G C T A A T C G A C G T A C G T
T C G A G A C T C T A G G T A C G A T C C T G A A T G C T C A G C G A T T G A C C T G A A G C T G A T C C T G A

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCCATGTTAG
KCCACGTGAC
 A C T G A G T C A G T C C T G A A G C T A C T G A C G T A C G T G C T A A T C G
A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C

USF2/MA0526.1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCCATGTTAG-
GTCATGTGACC
 A C T G A G T C A G T C C T G A A G C T A C T G A C G T A C G T G C T A A T C G A C G T
T C A G A G C T A G T C C G T A A G C T A C T G A C G T A C T G T C G A A G T C G A T C

MF0008.1_MADS_class/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCCATGTTAG-
-CCATATATGG
 A C T G A G T C A G T C C T G A A G C T A C T G A C G T A C G T G C T A A T C G A C G T
A C G T G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCCATGTTAG
CGTGCCAAG----
 A C G T A C G T A C G T A C T G A G T C A G T C C T G A A G C T A C T G A C G T A C G T G C T A A T C G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

Creb3l2/MA0608.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCCATGTTAG
GCCACGTGT-
 A C T G A G T C A G T C C T G A A G C T A C T G A C G T A C G T G C T A A T C G
A C T G G T A C A T G C C G T A A G T C A C T G A C G T A T C G C A G T A C G T