Information for 2-GAGAGGCAGAATAGGC (Motif 2)

A T C G C G T A A C T G C G T A C T A G A C T G A G T C C G T A A C T G C G T A C G T A C G A T C G T A A C T G T A C G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C G T C G T A A C G T A C G T A G T C A C G T A C T G A G T C A G T C A C G T G T A C A C G T A T G C
p-value:1e-11
log p-value:-2.734e+01
Information Content per bp:1.928
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.36%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.2 +/- 23.5bp
Average Position of motif in Background64.9 +/- 9.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0173.1_Sox21_2/Jaspar

Match Rank:1
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GAGAGGCAGAATAGGC-
NNNNNGAACAATTGANN
 A T C G C G T A A C T G C G T A C T A G A C T G A G T C C G T A A C T G C G T A C G T A C G A T C G T A A C T G T A C G A G T C A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:2
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:GAGAGGCAGAATAGGC----
NNNGGGHAGCAHRTGCTRCC
 A T C G C G T A A C T G C G T A C T A G A C T G A G T C C G T A A C T G C G T A C G T A C G A T C G T A A C T G T A C G A G T C A C G T A C G T A C G T A C G T
A T G C A G T C G C A T C T A G A C T G C T A G G A C T C G T A C T A G A G T C T G C A G C A T C T G A A C G T T C A G A G T C A C G T C T A G A G T C A G T C

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.47
Offset:1
Orientation:forward strand
Alignment:GAGAGGCAGAATAGGC
-TGACANARRCCAGRC
 A T C G C G T A A C T G C G T A C T A G A C T G A G T C C G T A A C T G C G T A C G T A C G A T C G T A A C T G T A C G A G T C
A C G T C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

PB0183.1_Sry_2/Jaspar

Match Rank:4
Score:0.47
Offset:0
Orientation:forward strand
Alignment:GAGAGGCAGAATAGGC-
TCACGGAACAATAGGTG
 A T C G C G T A A C T G C G T A C T A G A C T G A G T C C G T A A C T G C G T A C G T A C G A T C G T A A C T G T A C G A G T C A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

Crx/MA0467.1/Jaspar

Match Rank:5
Score:0.47
Offset:3
Orientation:forward strand
Alignment:GAGAGGCAGAATAGGC
---AAGAGGATTAG--
 A T C G C G T A A C T G C G T A C T A G A C T G A G T C C G T A A C T G C G T A C G T A C G A T C G T A A C T G T A C G A G T C
A C G T A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.47
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGGCAGAATAGGC
NTGATTGACAGN------
 A C G T A C G T A T C G C G T A A C T G C G T A C T A G A C T G A G T C C G T A A C T G C G T A C G T A C G A T C G T A A C T G T A C G A G T C
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Gata4/MA0482.1/Jaspar

Match Rank:7
Score:0.46
Offset:4
Orientation:reverse strand
Alignment:GAGAGGCAGAATAGGC
----NNGAGATAAGA-
 A T C G C G T A A C T G C G T A C T A G A C T G A G T C C G T A A C T G C G T A C G T A C G A T C G T A A C T G T A C G A G T C
A C G T A C G T A C G T A C G T T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A A C G T

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:8
Score:0.46
Offset:6
Orientation:forward strand
Alignment:GAGAGGCAGAATAGGC
------CAGATAAGGN
 A T C G C G T A A C T G C G T A C T A G A C T G A G T C C G T A A C T G C G T A C G T A C G A T C G T A A C T G T A C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:9
Score:0.46
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGGCAGAATAGGC
BTGABTGACAGS------
 A C G T A C G T A T C G C G T A A C T G C G T A C T A G A C T G A G T C C G T A A C T G C G T A C G T A C G A T C G T A A C T G T A C G A G T C
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:10
Score:0.45
Offset:5
Orientation:forward strand
Alignment:GAGAGGCAGAATAGGC---
-----GGAGAAAGGTGCGA
 A T C G C G T A A C T G C G T A C T A G A C T G A G T C C G T A A C T G C G T A C G T A C G A T C G T A A C T G T A C G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A